View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12610_low_2 (Length: 632)
Name: NF12610_low_2
Description: NF12610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12610_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 3 - 618
Target Start/End: Original strand, 50205236 - 50205850
Alignment:
| Q |
3 |
agaagaagagagagcataacatattgtttctgttatatgtttgatacatattttaaaagtagaacaaaccatgccggtagacaacactataaatatctaa |
102 |
Q |
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| T |
50205236 |
agaagaagagagagcataacatattgtttctgttatatgtttgatacatatttcaaaagtagaacaaaccatgccggtagacaatcctataaatatctac |
50205335 |
T |
|
| Q |
103 |
aatgggaaaaggaatgaacaacaaaaagtttctaaggattaaagaaacaacttaaatatcaggttcaatggagaaaacatgagaatttcaacaggcaata |
202 |
Q |
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| T |
50205336 |
aatgggaaaaggaatgaacaaccaaaagtttctaaggattaaagaaacaacttaaatatcaggttcaatggagaaaacatgagaatttcaacaggcaata |
50205435 |
T |
|
| Q |
203 |
ttacagtgaaaagtacaaaggagtgctgttaaataacagttataacggtgctacagcgctgttgaataacgcagtttgcacaaattggtattgttccgaa |
302 |
Q |
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| T |
50205436 |
ttacagtgaaaagtacaaaggagtgatgttaaataacagttataagggtgctacagcgctgttgcataacgcagtttgcacaaattggtattgttccgaa |
50205535 |
T |
|
| Q |
303 |
gaccctaatcactactacaaaacattgtgaaatagcgactccaaaaatcagcaattgacaacagtggctaaaaggcatacaaagtataattaagcatcaa |
402 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50205536 |
gaccctaatcagtactacaaaacattgtgaaatagcgactccaaaaatcagcaattgacaacagtggctaaaaggcatacaaagtataattaagcatcaa |
50205635 |
T |
|
| Q |
403 |
ctatattnnnnnnnnnntagaacaaacctcaaatataacagaaaaaacaataagattgcgggaagtctggcgcctggatcgtgatctcctggtgactcga |
502 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50205636 |
ctatatt-aaaaaaaaatagaacaaacctcaaatataacagaaaaaacaataagattgcgggaagtctggcgcctggatcgtgatctcctggtgactcga |
50205734 |
T |
|
| Q |
503 |
gcaataacagtagcttcctctttagaaatatgtttaaggcgcttctcaaaatcatcgccgtgtaacctaaaaatcccattccaaattcgggaaatgaatc |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50205735 |
gcaataacagtagcttcctctttagaaatatgtttaaggcgcttctcaaaatcatcgccgtgtaacctaaaaatcccattccaaattcgggaaatgaatc |
50205834 |
T |
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| Q |
603 |
ctttgcgcttcttctt |
618 |
Q |
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| T |
50205835 |
ctttgcgcttcttctt |
50205850 |
T |
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