View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12610_low_4 (Length: 282)
Name: NF12610_low_4
Description: NF12610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12610_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 7908930 - 7908662
Alignment:
| Q |
20 |
ccattcagcaacatttgccataatgattccaatttttgctctaaacccacttcaccaatccacttagtcatttctaccacaaaccttttctttagaagtt |
119 |
Q |
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| T |
7908930 |
ccattcagcaaaatttgccataatgattccaatttttgctctaaacccacttcaccaatccactttatcatttctaccacaaaccttttctttagaagtt |
7908831 |
T |
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| Q |
120 |
ccaattcaggtttggtccatacacccatccttattaatgtgac---ct------------ttcca--tttcttagacctttccatttctaaatcttcaaa |
202 |
Q |
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| T |
7908830 |
ccaattcaggtttggtccatacacccatccttattaatgtgacaaactctataaatagtcttgcatttttcttagacctttccatttctaaatcttcaaa |
7908731 |
T |
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| Q |
203 |
atagaattgttgacctaagatcatac---aaaaactaataacaatgacatagaagagaaggtagaaact |
268 |
Q |
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| T |
7908730 |
atagaattgttgacctaagatcatacaaaaaaaactaataacaatgacatagaagagaaggtagaaact |
7908662 |
T |
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