View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12610_low_9 (Length: 209)
Name: NF12610_low_9
Description: NF12610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12610_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 579316 - 579494
Alignment:
| Q |
18 |
ctgcaggctggtgctgtgtccggtaaactgacggcggttttaattgaatgatttggctttatgaccttaggcgagatcagttatataggcagtattctaa |
117 |
Q |
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| T |
579316 |
ctgcaggctggtgctgtgtccggaaaactgactgcggttttaattgaatgatttggctttatgaccttaggcgagatcagttatataggcagtattctaa |
579415 |
T |
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| Q |
118 |
gtgaagaattttagctctggaatgagaactgatgag---taacactaatgagtagaaaattaagagaataaatgttact |
193 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
579416 |
gtgaagaattttagctctggaatgagaactgatgagttataacactaatgagtagaaaattaagagaataaatgttact |
579494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 593105 - 592927
Alignment:
| Q |
18 |
ctgcaggctggtgctgtgtccggtaaactgacggcggttttaattgaatgatttggctttatgaccttaggcgagatcagttatataggcagtattctaa |
117 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
593105 |
ctgcaggctggtgctgtgtccggaaaactgactgcggttttaattgaatgatttggctttatgaccttaggcgagatcagttatataggcagtattctaa |
593006 |
T |
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| Q |
118 |
gtgaagaattttagctctggaatgagaactgatgag---taacactaatgagtagaaaattaagagaataaatgttact |
193 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
593005 |
gtgaagaattttagctctggaatgagaactgatgagttataacactaatgagtagaaaattaagagaataaatgttact |
592927 |
T |
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