View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_high_1 (Length: 781)
Name: NF12611_high_1
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 13 - 666
Target Start/End: Complemental strand, 32765582 - 32764929
Alignment:
| Q |
13 |
gagaagaaaagatacagaagtgggtgaattccattaatacgtctaattgttgaccatggtttgatgtattataaatacccgtggtttgtgcctagttttg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32765582 |
gagaagaaaagatacagaagtgggtgaattccattaatacgtctaattgttgaccatggtttgatgtattataaatacccatggtttgtgcctagttttg |
32765483 |
T |
|
| Q |
113 |
aaactaaatctgattttcataatgccatttcttatttattacaacgacactgtttcctgatttaattaattagaataatgtaatagtatccattgtcaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32765482 |
aaactaaatctgattttcataatgccatttcttatttattacaacgacactgtttcctgatttaattaattaatataatgtaatagtatccattgtcaga |
32765383 |
T |
|
| Q |
213 |
ccttcaaattgcgggtgtctgattttataagttgatcaaacagttatttgcaacatttacagtttctctgctttctggagtgaaattgatcaaacatcta |
312 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32765382 |
ccttcaaattgtgggtgtctgattttataagttgatcaaacagttatttgcaacatttacagtttctctgctttctggagtaaaattgatcaaacatcta |
32765283 |
T |
|
| Q |
313 |
ggcaccgcatatctagggagaagacagatgtaactttgaaagtagtagtgaaacacttctttatcatgaaagatatcacctctactttggtaatggagtc |
412 |
Q |
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||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32765282 |
ggcgccgcatatctagggagaagacagatgtaattttgaaagtagtagtgaaacacttctttatcatgaaagatatcacctctactttggtaatggagtc |
32765183 |
T |
|
| Q |
413 |
cttgtatagtggattgaaggctctcgaaggccagactagnnnnnnngaatggaaaaaattgttggattctgaagaaataccaacacctattgttcatgtt |
512 |
Q |
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| T |
32765182 |
cttgtatagtggattgaaggctctcgagggtcagactagcaaaaaagaatggaaaaaattgttggattctgaaaaaataccaacacctattgttcgcgtt |
32765083 |
T |
|
| Q |
513 |
gagaatgacatgtttgtactggtggatgatgttttactgcttcttgaaagggctgctacagaaccgctccctccaaaagatgaaaaggatcctcaaaatc |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
32765082 |
gagaatgacatgtttgtactggtggatgatgttttactgcttcttgaaagggctgctacagaaccgctccctccaaaagatgaaaagggtccccaaaatt |
32764983 |
T |
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| Q |
613 |
gcacgaagggaagatgtagaacaatttttgtcaaagcaactaaggatttacttg |
666 |
Q |
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| ||||||| ||||| ||||| ||| ||||| |||||||||||||||||||||| |
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| T |
32764982 |
gtacgaaggtaagatttagaataatatttgttaaagcaactaaggatttacttg |
32764929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 108 - 662
Target Start/End: Complemental strand, 32754800 - 32754235
Alignment:
| Q |
108 |
ttttgaaactaaatctgattttcataatgccatttcttatttattacaacgacactgttt--cctgatttaattaattagaataatgtaatagtatccat |
205 |
Q |
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|||| ||| ||||| ||||||| ||| ||||||||| |||||||| ||| |||||| ||| | ||||||||||| || | ||||| ||||||||||| |
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| T |
32754800 |
tttttaaattaaatttgatttttatattgccatttcgtatttattgcaatgacactttttttctcgatttaattaactaataaaatgtgatagtatccat |
32754701 |
T |
|
| Q |
206 |
tgtca---------gaccttcaaattgcgggtgtctgattttataagttgatcaaacagttatttgcaacatttacagtttctctgctttctggagtgaa |
296 |
Q |
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|| || |||||| || ||| ||||||||||||||||||| |||||||||||| || ||||| |||| |||||||| |||||||||| | ||| |
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| T |
32754700 |
tgccacttgtgccagacctttaagttgtgggtgtctgattttataagctgatcaaacagtaatgtgcaatatttgcagtttctttgctttctggggggaa |
32754601 |
T |
|
| Q |
297 |
attgatcaaacatctaggcaccgcatatctagggagaagacagatgtaactttgaaagtagtagtgaaacacttctttatcatgaaagatatcacctcta |
396 |
Q |
| |
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|||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||| |||| |
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| T |
32754600 |
gttgatcaaacatctaggcgccgcatgtctagggagaagacagatgtaattttgaaagtagtagtgaaacacttctttattgagaaagaagtcacttcta |
32754501 |
T |
|
| Q |
397 |
ctttggtaatggagtccttgtatagtggattgaaggctctcgaaggccagactagnnnnnnngaatggaaaaaattgttggattctgaagaaataccaac |
496 |
Q |
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||||||| ||||| |||||||||||||||||||||||||| || ||||||||||| | ||| ||||||||||||||||||||||| |||| | |
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| T |
32754500 |
ctttggttatggattccttgtatagtggattgaaggctcttgagggccagactagcaagaaaggttgggtaaaattgttggattctgaagaaacaccagc |
32754401 |
T |
|
| Q |
497 |
acctattgttcatgttgagaatgacatgtttgtactggtggatgatgttttactgcttcttgaaagggctgctacagaaccgctccctccaaaagatgaa |
596 |
Q |
| |
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||||||||||| ||||||||| || ||||||||||||||||| ||| |||||| ||||||||||||||||||| |||||| || ||||||||||||||| |
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| T |
32754400 |
acctattgttcgtgttgagaaggatatgtttgtactggtggacgatattttaccacttcttgaaagggctgctatagaaccacttcctccaaaagatgaa |
32754301 |
T |
|
| Q |
597 |
aaggatcctcaaaatcgcacgaagggaagatgtagaacaatttttgtcaaagcaactaaggattta |
662 |
Q |
| |
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| T |
32754300 |
aagggtccccaaaatcgtacgaaggtaagatttagaataatgtttgttaaagtaactaaggattta |
32754235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 294 - 621
Target Start/End: Original strand, 16776213 - 16776543
Alignment:
| Q |
294 |
gaaattgatcaaacatctaggcaccgcatatctagggagaagacagatgtaactttgaaagtagtagtgaaacacttctttatcatgaaagatatcacct |
393 |
Q |
| |
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|||||||| ||||| ||||||| |||||| |||||||| || |||||||||| ||||||||||||||| |||||||||||||| |||||| | |||| |
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| T |
16776213 |
gaaattgaccaaacttctaggcgccgcatgtctagggaaaaaacagatgtaattttgaaagtagtagtaaaacacttctttatagagaaagaagtgacct |
16776312 |
T |
|
| Q |
394 |
ctactttggtaatggagtccttgtatagtggattgaaggctctcgaaggccagactagnnnnnnngaatggaa----aaaattgttggattctgaagaaa |
489 |
Q |
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| T |
16776313 |
ctactttggtgatggactccttatatagtggattgaaggctcttgaaggccagacca-agtccaagaaaggtagggtaaaattgttggacgctgaagaaa |
16776411 |
T |
|
| Q |
490 |
taccaacacctattgttcatgttgagaatgacatgtttgtactggtggatgatgttttactgcttcttgaaagggctgctacagaaccgctccctccaaa |
589 |
Q |
| |
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| ||| | || ||||| | || |||||| || |||||||||||||||||||||||| || || | ||||| |||||||||| |||||| |||||||| || |
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| T |
16776412 |
tgccagctccaattgtccgtgctgagaaagatatgtttgtactggtggatgatgttctattgttacttgagagggctgctatagaacctctccctcctaa |
16776511 |
T |
|
| Q |
590 |
agatgaaaaggatcctcaaaatcgcacgaagg |
621 |
Q |
| |
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|||||| || | ||||||||||||||| |||| |
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| T |
16776512 |
agatgagaaaggtcctcaaaatcgcacaaagg |
16776543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 673 - 759
Target Start/End: Complemental strand, 32754202 - 32754116
Alignment:
| Q |
673 |
tgagcattgaaccaattgaaatgtgatggtattgatgcaactgtggaagggaatttttagaggatgaagttttggtcaaaagagtag |
759 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| |||| |||||||| |||||| ||||||| |||||||||| | |||||||| |
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| T |
32754202 |
tgagcattgagccaattgaaatgtgatggtattgatacaaccgtggaaggaaattttcagaggataaagttttggttataagagtag |
32754116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 32754886 - 32754829
Alignment:
| Q |
54 |
tctaattgttgaccatggtttgatgtattataaatacccgtggtttgtgcctagtttt |
111 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||| |||| ||||||||||| |
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| T |
32754886 |
tctaattgttgatcatgatttgatgtattataaataccctcagtttatgcctagtttt |
32754829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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