View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12611_high_13 (Length: 449)

Name: NF12611_high_13
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12611_high_13
NF12611_high_13
[»] chr3 (9 HSPs)
chr3 (51-381)||(6942439-6942776)
chr3 (106-379)||(6787945-6788229)
chr3 (180-381)||(6939399-6939601)
chr3 (189-300)||(8467036-8467147)
chr3 (378-444)||(6942806-6942874)
chr3 (378-444)||(6939631-6939699)
chr3 (190-241)||(41035956-41036007)
chr3 (24-65)||(6788244-6788285)
chr3 (35-156)||(8466898-8467021)
[»] chr8 (2 HSPs)
chr8 (186-281)||(5354180-5354275)
chr8 (185-247)||(5508953-5509015)
[»] chr1 (2 HSPs)
chr1 (186-239)||(34564857-34564910)
chr1 (186-234)||(30526203-30526251)
[»] chr5 (1 HSPs)
chr5 (182-260)||(28362656-28362734)
[»] chr2 (1 HSPs)
chr2 (191-287)||(33720155-33720255)
[»] chr4 (1 HSPs)
chr4 (194-280)||(48681542-48681628)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 51 - 381
Target Start/End: Original strand, 6942439 - 6942776
Alignment:
Q  51 aagaaaaagatttaagaggaatatgactgtttatattggtttccctaccaacgttaacatggcatgtcgcccataagtatgttagaacagcaaacccgtt 150  Q
    |||||||| ||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||  |||    
T  6942439 aagaaaaacatttaagaggaatgtaacagtttacattggtttccctaccaatgttaacatggcatgttacccataagtatgttagaacagcaaactggtt 6942538  T
Q  151 caaaaatcaaaagattaaagaaaaagtaaa------taatgaacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaag 244  Q
    |||||||||||| |||||||||| ||||||      |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||    
T  6942539 caaaaatcaaaaaattaaagaaacagtaaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagag 6942638  T
Q  245 cagctgctgttcctttttatcatgagtgaaagattaaggtttacaatgcacaacttgtgcataaacgc--ttgtccagattacaacatcacccctgaacc 342  Q
    ||||||| |||||||||||| ||||| |||||| ||| ||||||||||||||||||||| |||||| |  |||||||||||||||||||| |||||||||    
T  6942639 cagctgcagttcctttttattatgagagaaagagtaatgtttacaatgcacaacttgtgtataaacactattgtccagattacaacatcaaccctgaacc 6942738  T
Q  343 gtaccccccagtcgccatcacacaacaaactatgatacc 381  Q
    ||| ||||||||||||||||  |||||||||||||||||    
T  6942739 gta-cccccagtcgccatcatgcaacaaactatgatacc 6942776  T

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Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 106 - 379
Target Start/End: Complemental strand, 6788229 - 6787945
Alignment:
Q  106 aacatggcatgtcgcccataagtatgttagaacagcaaacccgttcaaaaatcaaaagattaaagaaaaagtaaa------taatgaacacacgatgttt 199  Q
    |||||| || || |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||      |||| ||||||||||||||    
T  6788229 aacatgtcacgttgcccataagtatgttagatcagcaaacccgttcaaaaatcaaaagataaaagacaaagtaaacgcaaataataaacacacgatgttt 6788130  T
Q  200 ggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagattaaggtttacaatgcacaact 299  Q
    ||||||||| ||||||||||||||||||| |||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  6788129 ggtaacgaagttcggccaatattgcctacatctccgactgcagagaagctgcagttcctttttattatgagtgaaagattaaggtttacaatgcacaact 6788030  T
Q  300 tgtgcataa------acgcttgtccagattacaacatcacccctgaaccgtaccccccagtcgccatcacacaacaaactatgata 379  Q
    |||| ||||      ||  |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  6788029 tgtgtataattaaacactattgtccagattacaacatcacccctgaaccata-cccccagtcgccattacacaacaaactatgata 6787945  T

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Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 180 - 381
Target Start/End: Original strand, 6939399 - 6939601
Alignment:
Q  180 ataatgaacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagatt 279  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |||||| |    
T  6939399 ataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgagagaaagagt 6939498  T
Q  280 aaggtttacaatgcacaacttgtgcat--aaacgcttgtccagattacaacatcacccctgaaccgtaccccccagtcgccatcacacaacaaactatga 377  Q
    || |||||||||||||||| |||| ||  ||||  |||||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||    
T  6939499 aatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaaccgtgaaccgta-cccccagtcgccatcacgcaacaaactatga 6939597  T
Q  378 tacc 381  Q
    ||||    
T  6939598 tacc 6939601  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 189 - 300
Target Start/End: Original strand, 8467036 - 8467147
Alignment:
Q  189 acacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagattaaggtttac 288  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||| | || |||||| |||||||| ||| || | |||||||||| |||||||    
T  8467036 acacaatgtttggtaacgaagttcggccaatattgcctacgtctccgactgtagagaagctgcagttcctttgtattatcaatgaaagattagggtttac 8467135  T
Q  289 aatgcacaactt 300  Q
    | ||||||||||    
T  8467136 agtgcacaactt 8467147  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 444
Target Start/End: Original strand, 6942806 - 6942874
Alignment:
Q  378 taccctctttgaactttgaatgttt--ctttatcatcatctactgatctttcctccgattcttctcact 444  Q
    ||||||||||||||||||||| |||  ||||||||||||||||| ||||||||||| |||||| |||||    
T  6942806 taccctctttgaactttgaatttttttctttatcatcatctactcatctttcctccaattcttatcact 6942874  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 444
Target Start/End: Original strand, 6939631 - 6939699
Alignment:
Q  378 taccctctttgaactttgaatgttt--ctttatcatcatctactgatctttcctccgattcttctcact 444  Q
    ||||||||||||||||||||| |||  ||||||||||||||||| || |||||||| |||||| |||||    
T  6939631 taccctctttgaactttgaatttttttctttatcatcatctactcatatttcctccaattcttatcact 6939699  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 41035956 - 41036007
Alignment:
Q  190 cacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgca 241  Q
    |||||||||||||||||||||||| |||||  |||||||||||| |||||||    
T  41035956 cacgatgtttggtaacgaaattcgtccaattgtgcctacgtctcagactgca 41036007  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 6788285 - 6788244
Alignment:
Q  24 acaacacaattagagaacaatggagcgaagaaaaagatttaa 65  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  6788285 acaacacaattagagaacaatagatcgaagaaaaagatttaa 6788244  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 8466898 - 8467021
Alignment:
Q  35 agagaacaatggagcgaagaaaaagatttaagaggaatatgactgtttatattggtttccctaccaacgttaacatggcatgtcgcccataa--gtatgt 132  Q
    |||||| ||| ||| |||||||||||||| || ||||| |||| ||||| | ||| |||||| |||| || ||||| |  ||| ||| ||||   |||||    
T  8466898 agagaaaaatagagggaagaaaaagatttgagtggaatgtgacagtttaaaatggattcccttccaatgtaaacattgtgtgttgccaataaatatatgt 8466997  T
Q  133 tagaacagcaaacccgttcaaaaa 156  Q
    |||||||||||||| |||||||||    
T  8466998 tagaacagcaaaccagttcaaaaa 8467021  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 5354180 - 5354275
Alignment:
Q  186 aacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagattaa 281  Q
    ||||||| ||||||||||||||| |||||||||| |||||||| |||| |||| |||||||||||  |||||||| ||| ||  |||||| |||||    
T  5354180 aacacacaatgtttggtaacgaagttcggccaattttgcctacttctctgactacaaagcagctgtagttcctttgtattatcggtgaaaaattaa 5354275  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 5508953 - 5509015
Alignment:
Q  185 gaacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcag 247  Q
    |||||||| ||| ||||||||||||||| |||||| ||||||||  |||| |||||| |||||    
T  5508953 gaacacacaatgcttggtaacgaaattcagccaattttgcctacacctccaactgcagagcag 5509015  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 34564910 - 34564857
Alignment:
Q  186 aacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactg 239  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  34564910 aacacacgatgtttggtaacgaagttcggccaaatttgcctacgtctccgactg 34564857  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 30526203 - 30526251
Alignment:
Q  186 aacacacgatgtttggtaacgaaattcggccaatattgcctacgtctcc 234  Q
    ||||||||||||||||||||||| || | |||||  |||||||||||||    
T  30526203 aacacacgatgtttggtaacgaagtttgaccaattgtgcctacgtctcc 30526251  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 28362734 - 28362656
Alignment:
Q  182 aatgaacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttccttt 260  Q
    |||||||||||||||||||||||| || ||   ||||| ||||||| ||||| ||||||| ||||||||| ||||||||    
T  28362734 aatgaacacacgatgtttggtaacaaagtttaaccaattttgcctatgtctcagactgcagagcagctgcagttccttt 28362656  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 287
Target Start/End: Complemental strand, 33720255 - 33720155
Alignment:
Q  191 acgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgca----aagcagctgctgttcctttttatcatgagtgaaagattaaggttt 286  Q
    |||||||||| ||||||| |||||||||| |||||||| ||||||||||||     ||||||||| |||||||| ||| ||  ||||||| ||| |||||    
T  33720255 acgatgtttgataacgaagttcggccaattttgcctacatctccgactgcagagcgagcagctgcagttcctttctattatctgtgaaagtttagggttt 33720156  T
Q  287 a 287  Q
    |    
T  33720155 a 33720155  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 280
Target Start/End: Complemental strand, 48681628 - 48681542
Alignment:
Q  194 atgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagatta 280  Q
    ||||||||||| ||| |||||||||| ||| || ||||||||| |||| ||  ||||| |||||||| ||| || |||| |||||||    
T  48681628 atgtttggtaatgaagttcggccaattttgtctgcgtctccgaatgcagagtggctgcagttcctttatattatcagtggaagatta 48681542  T

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