View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_high_16 (Length: 426)
Name: NF12611_high_16
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 47253458 - 47253058
Alignment:
| Q |
18 |
atatttcttgctagattcataatctgtcctggagtacatcctttggtaaatatttgatgttatgtactttaatagattagtttctgtaaaagaatgaagt |
117 |
Q |
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| T |
47253458 |
atatttcttgctagattcataatctgtcctggagtacatcctttggtaaatatttgatgttatgtactttaattgattagtttctgtaaaagaatgaagt |
47253359 |
T |
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| Q |
118 |
aatttctgtatttcaatgcatttaatgttgagaatctattgcagacctcatctttgagtgaatgcttgttttacaaatctgctgagttggaggaatgtgt |
217 |
Q |
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| T |
47253358 |
aatttctgtatttcaatgcatttaatgttgagaatctattgcagacctcatctttgagtgaatgcttgttttacaaatctgctgagttggaggaatgtgt |
47253259 |
T |
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| Q |
218 |
tctgattttgcatgatttgtatttggtaagaagggctgcatcattgaaagctgttagggagaaatacaagcaacacaaggtgattgttttagcctttctt |
317 |
Q |
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| T |
47253258 |
tctgattttgcatgatttgtatttggtaagaagggctgcatcattgaaagctgttagggagaaatacaagcaacacaaggtgattgttttagcctttctt |
47253159 |
T |
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| Q |
318 |
tgttatagttaatatatagctggttcttattattgcaagttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatct |
417 |
Q |
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| T |
47253158 |
tgttatagttaatatatagctggttcttattattgcaagttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatct |
47253059 |
T |
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| Q |
418 |
c |
418 |
Q |
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| T |
47253058 |
c |
47253058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 126 - 308
Target Start/End: Complemental strand, 47242100 - 47241918
Alignment:
| Q |
126 |
tatttcaatgcatttaatgttgagaatctattgcagacctcatctttgagtgaatgcttgttttacaaatctgctgagttggaggaatgtgttctgattt |
225 |
Q |
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| T |
47242100 |
tatttcaaggtacttaatgttgcgaatctatttcagacttcatccctatgtgaatgtctgggttacaagtcggctgaattggaagaatgtgttatgattt |
47242001 |
T |
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| Q |
226 |
tgcatgatttgtatttggtaagaagggctgcatcattgaaagctgttagggagaaatacaagcaacacaaggtgattgtttta |
308 |
Q |
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| T |
47242000 |
tacatgacttgtatttgtcaagaagggcagcatccttcaaagctgttagggagaaatacaagcaacaaaaggtgattgtttta |
47241918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 308
Target Start/End: Complemental strand, 47248535 - 47248367
Alignment:
| Q |
140 |
taatgttgagaatctattgcagacctcatctttgagtgaatgcttgttttacaaatctgctgagttggaggaatgtgttctgattttgcatgatttgtat |
239 |
Q |
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| T |
47248535 |
taatgttcagaatctattgcagactccttccctgtgtgaatgcttgggttacacatcggctaatttagaagattgtgttatcattttacatgatttgtat |
47248436 |
T |
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| Q |
240 |
ttggtaagaagggctgcatcattgaaagctgttagggagaaatacaagcaacacaaggtgattgtttta |
308 |
Q |
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| T |
47248435 |
atgtcaagaaaggcaggatccttcaaagctgttcgtgacaaatacaagcagaacaaggtgattgtttta |
47248367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 47242195 - 47242136
Alignment:
| Q |
21 |
tttcttgctagattcataatctgtcctggagtacatcctttggtaaatatttgatgttat |
80 |
Q |
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| T |
47242195 |
tttcttgctagatttattctccggcctggagtacatccttgggtaaatatttgatgttat |
47242136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 407
Target Start/End: Complemental strand, 47241888 - 47241822
Alignment:
| Q |
341 |
ttcttattattgcaagttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaacct |
407 |
Q |
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||||||||| ||||||||| |||||||||| | |||| || |||||||||| ||||||||||||| |
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| T |
47241888 |
ttcttattaatgcaagttggttgacttgaactcattgtctggaacagttcaaatatgtggcaaacct |
47241822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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