View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_high_25 (Length: 363)
Name: NF12611_high_25
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 4702537 - 4702400
Alignment:
| Q |
1 |
tggtatataatgtaacacatattataatattcaatttaactttgattaatttgctctaacaaatcaaatgagagtataaggagtcactgcgggaaagaaa |
100 |
Q |
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| T |
4702537 |
tggtatataatgtaacacatattataatattcaatttaactttgattaatttgctctaacaaatcaaatgagagtataaggagtcactgcaggaaagaaa |
4702438 |
T |
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| Q |
101 |
taaattgtagagattatatttcaatagaacaattataa |
138 |
Q |
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| T |
4702437 |
taaattgtagagattatatttcaatagaacaattataa |
4702400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 242 - 363
Target Start/End: Complemental strand, 4702390 - 4702269
Alignment:
| Q |
242 |
ttcttaaccattcaatttattcggaagttccagccacagctagtatgtattgctgtcaaaagaatccgtcaacccctacctggtgtggggcagcaggcca |
341 |
Q |
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| T |
4702390 |
ttcttaaccattcaatttattcggaagttccagccacagctagtatgtattgctgtcaaaagaatccgtcaacccctacctggtgtggggcagcaggcca |
4702291 |
T |
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| Q |
342 |
gagagcaaaacaggattaggcc |
363 |
Q |
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| T |
4702290 |
gagagcaaaacaggattaggcc |
4702269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 4705709 - 4705677
Alignment:
| Q |
145 |
gactaaaataattatgaaaaaagttccaatatt |
177 |
Q |
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| T |
4705709 |
gactaaaataattatggaaaaagttccaatatt |
4705677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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