View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_high_27 (Length: 351)
Name: NF12611_high_27
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 14670013 - 14669667
Alignment:
| Q |
1 |
ttatcttatctattgctgattcgggtatgtttggatttgtggtatagggtggaatgaaatggaataggccagttagattttnnnnnnnn-tgaatgttat |
99 |
Q |
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| T |
14670013 |
ttatcttatctattgctgattcgggtatgtttggatttgtggtatagggtggaatgaaatggaataggccagttagattttaaaacaaaatgaatgttat |
14669914 |
T |
|
| Q |
100 |
gttgttccatttcattccaccatataccagaaaatccgaacatccgaacacacccgaaggcaagaattggataataattcaatctcattgattgagatga |
199 |
Q |
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| T |
14669913 |
gttgttccatttcattccaccatataccagaaaatccgaagttccgaacacacccgaaggcaagaattggataataattcaatctcattgattgagatga |
14669814 |
T |
|
| Q |
200 |
gctgtttgaattgatacaagtttgttgccatcttgttgaacttttaggtacttggctgttggtataatgcacattccatgttatggcttctttgccttaa |
299 |
Q |
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| T |
14669813 |
gctgtttgaattgatacaagtttgttgccatcttgttgaacttttaggtacttggctgttggtataatgcacattccatgttatggcttctttgccttaa |
14669714 |
T |
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| Q |
300 |
tagtgaagttgaagcacttgtggttgtcaagattgttctctgcttct |
346 |
Q |
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| T |
14669713 |
tagtgaagttgaagcacttgtggttgtcaagattgttctctggttct |
14669667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 37411081 - 37411039
Alignment:
| Q |
24 |
ggtatgtttggatttgtggtatagggtggaatgaaatggaata |
66 |
Q |
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| T |
37411081 |
ggtatgtttgaattgctggtatagggtggaatgaaatggaata |
37411039 |
T |
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