View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12611_high_3 (Length: 657)
Name: NF12611_high_3
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_high_3 |
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| [»] scaffold1019 (1 HSPs) |
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| [»] scaffold1036 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 14 - 590
Target Start/End: Complemental strand, 17830793 - 17830217
Alignment:
| Q |
14 |
caaaggtagaaatatcaaagactgcttgtgtcttgcttcaaaagcagttaatttattggaaaagaaagcttatggtgggaatttagctttaaaaatcgac |
113 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
17830793 |
caaaggtagaaatatcaaagacgacttgtgtcttgcttcagaagcagttactttattggacaagaaagcttatggtgggaatttagctttgaaaatcgac |
17830694 |
T |
|
| Q |
114 |
atcactaaagcttttgacactttagattggggtttccttctaaaagttctcagttgttttggttttgatcagacattctgtcattggatagcctccatct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17830693 |
atcactaaagcttttgacactttagattggggtttccttctaaaagttctcagttgttttggttttgatcagacattctgtcatcggatagcctccatct |
17830594 |
T |
|
| Q |
214 |
tgtcttcagcatctctttctatttcaattaatggtgtgcagcaaggttacttcaactgttctagaggagtccgacaaggtgatccattgtcgcctcttct |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
17830593 |
tgtcttcagcatctctttctatttcaattaatggtgtgcagcagggttacttcaactgttctagaggagttcaacaaggtgatccattgtcgcctcttct |
17830494 |
T |
|
| Q |
314 |
tttttgtttggcagaagaagttttgagcatgggtattaacaagcttgttgaggatggaaagattaagcttatctcaggagccagaaacactcaaattccg |
413 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
17830493 |
tttttgtttggcagaagaagttttgagcatgggtattaacaagcttgttgaggatggaaagattaagcttatctcaggatccagaaacacgcaaattccg |
17830394 |
T |
|
| Q |
414 |
tctcattgcttttacgcagatgatattatgatctactgcagagggaatcttgaaagtttacaggctttgcagaatttattcactagatatgctaattgtg |
513 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17830393 |
tctcattgcttttacgcagatgatattatgatatactgcagagagaatcttgaaagtttacaggctttgcagaatttattcactagatatgctaattgtg |
17830294 |
T |
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| Q |
514 |
cggggcaggttattagtgccaggaaatcaactatcttcgcatgtggtattactcaaggcagaatgcaacatatcatt |
590 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |
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| T |
17830293 |
cggggcaggttattagtgccaggaaatcaactatcttcgcaggtggtattactcaaagcagaatgcaacacatcatt |
17830217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 82 - 550
Target Start/End: Complemental strand, 11178880 - 11178412
Alignment:
| Q |
82 |
cttatggtgggaatttagctttaaaaatcgacatcactaaagcttttgacactttagattggggtttccttctaaaagttctcagttgttttggttttga |
181 |
Q |
| |
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||||||| || ||||||||||| || || ||||| || ||||| ||||||||||||||||||||||| || || |||||||||||||||||| |||| | |
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| T |
11178880 |
cttatggaggcaatttagctttgaagattgacattaccaaagcctttgacactttagattggggttttctgctgaaagttctcagttgttttagtttcaa |
11178781 |
T |
|
| Q |
182 |
tcagacattctgtcattggatagcctccatcttgtcttcagcatctctttctatttcaattaatggtgtgcagcaaggttacttcaactgttctagagga |
281 |
Q |
| |
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||||| ||| || | |||||||| || ||| | ||||| || |||||| ||||| || ||||| || || |||| || |||||||| | || || |
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| T |
11178780 |
tcagatattttgcaaatggatagcttcaatcctctcttctgctcatctttccatttctatcaatggagttcaaaaaggatatttcaactgcaccaggggg |
11178681 |
T |
|
| Q |
282 |
gtccgacaaggtgatccattgtcgcctcttcttttttgtttggcagaagaagttttgagcatgggtattaacaagcttgttgaggatggaaagattaagc |
381 |
Q |
| |
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||| ||||||| || || |||| |||||| | |||||||| || ||||||||||| || | ||| || ||| | || || ||||| |||||| | |||| |
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| T |
11178680 |
gtcagacaaggagaccctgtgtctcctcttttgttttgtttagctgaagaagttttaagtaggggcatcaacgaactagtggaggaaggaaaggtcaagc |
11178581 |
T |
|
| Q |
382 |
ttatctcaggagccagaaacactcaaattccgtctcattgcttttacgcagatgatattatgatctactgcagagggaatcttgaaagtttacaggcttt |
481 |
Q |
| |
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| || ||||| |||| |||||| || || ||||| ||||| || ||| ||||||| ||||| ||||||||||| || ||||||||||| | || | |
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| T |
11178580 |
taatatcaggcgccataaacacattcatcccttctcactgcttctatgcatatgatatcatgatttactgcagaggtaacattgaaagtttagaatctct |
11178481 |
T |
|
| Q |
482 |
gcagaatttattcactagatatgctaattgtgcggggcaggttattagtgccaggaaatcaactatctt |
550 |
Q |
| |
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| || |||||||||| ||||||||| | ||| || || || |||||||| |||||||| || ||||| |
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| T |
11178480 |
aaaaaacttattcactatatatgctaactctgctggccaagtaattagtgcaaggaaatctaccatctt |
11178412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 70 - 562
Target Start/End: Original strand, 28714654 - 28715146
Alignment:
| Q |
70 |
tggaaaagaaagcttatggtgggaatttagctttaaaaatcgacatcactaaagcttttgacactttagattggggtttccttctaaaagttctcagttg |
169 |
Q |
| |
|
|||| |||||||||| |||||| || |||||| | || || || ||||| ||||||||||||||| | |||||| || || | || || |||||||| |
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| T |
28714654 |
tggacaagaaagcttttggtggcaacttagctctcaagattgatatcacaaaagcttttgacactcttgattggaagtttctcttgaaggtgctcagttg |
28714753 |
T |
|
| Q |
170 |
ttttggttttgatcagacattctgtcattggatagcctccatcttgtcttcagcatctctttctatttcaattaatggtgtgcagcaaggttacttcaac |
269 |
Q |
| |
|
|||||| || ||||||| |||||| ||||||| || ||||| || || ||||| ||||||| || ||||||||||| || || ||||| || || |
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|
| T |
28714754 |
ttttggcttcaatcagactttctgtaattggattgcttccattttatcctcagccactctttcaatctcaattaatggcaaacaacagggttattttaag |
28714853 |
T |
|
| Q |
270 |
tgttctagaggagtccgacaaggtgatccattgtcgcctcttcttttttgtttggcagaagaagttttgagcatgggtattaacaagcttgttgaggatg |
369 |
Q |
| |
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||| | || ||||| |||| || ||||||||||| |||||||| |||||||||||||||||||| | || | ||| || | ||||| || ||||| | |
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|
| T |
28714854 |
tgtacaaggggagttagacagggcgatccattgtcccctcttctattttgtttggcagaagaagtactaagtaggggaatcacaaagctggtggaggaag |
28714953 |
T |
|
| Q |
370 |
gaaagattaagcttatctcaggagccagaaacactcaaattccgtctcattgcttttacgcagatgatattatgatctactgcagagggaatcttgaaag |
469 |
Q |
| |
|
| || | ||| | || | || || ||||| | |||||| || || |||||||| || || |||||||||||||| || |||||||| ||| |||| | |
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| T |
28714954 |
gcaaagtcaagttaattactggtgcaagaaatattcaaataccttcacattgcttatatgcggatgatattatgatatattgcagaggaaattttgattg |
28715053 |
T |
|
| Q |
470 |
tttacaggctttgcagaatttattcactagatatgctaattgtgcggggcaggttattagtgccaggaaatcaactatcttcgcatgtggtat |
562 |
Q |
| |
|
| | | ||||| || ||| | ||| |||| ||||||||| |||| || |||||||||||||| || ||||| || || || ||| ||||||| |
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|
| T |
28715054 |
tcttgaagctttacacaatctcttctctaggtatgctaatagtgctggccaggttattagtgcaagaaaatctaccatatttgcaggtggtat |
28715146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 70 - 562
Target Start/End: Original strand, 16488286 - 16488778
Alignment:
| Q |
70 |
tggaaaagaaagcttatggtgggaatttagctttaaaaatcgacatcactaaagcttttgacactttagattggggtttccttctaaaagttctcagttg |
169 |
Q |
| |
|
|||| |||||||||| |||||| || |||||| | || || || ||||| ||||||||||||||| | |||||| || || | || || |||| ||| |
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|
| T |
16488286 |
tggacaagaaagcttttggtggcaacttagctctcaagattgatatcacaaaagcttttgacactcttgattggaagtttctcttgaaggtgctcaattg |
16488385 |
T |
|
| Q |
170 |
ttttggttttgatcagacattctgtcattggatagcctccatcttgtcttcagcatctctttctatttcaattaatggtgtgcagcaaggttacttcaac |
269 |
Q |
| |
|
|||||| || ||||||| |||||| ||||||| || ||||| || || ||||| ||||||| || ||||||||||| || || ||||| || || |
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|
| T |
16488386 |
ttttggcttcaatcagactttctgtaattggattgcttccattttatcctcagccactctttcaatctcaattaatggcaaacaacagggttattttaag |
16488485 |
T |
|
| Q |
270 |
tgttctagaggagtccgacaaggtgatccattgtcgcctcttcttttttgtttggcagaagaagttttgagcatgggtattaacaagcttgttgaggatg |
369 |
Q |
| |
|
||| | || ||||| |||| || |||||| |||| |||||||| |||||||||||||||||||| | || | ||| || | ||||| || ||||| | |
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|
| T |
16488486 |
tgtacaaggggagttagacagggcgatccaatgtcccctcttctattttgtttggcagaagaagtactaagtaggggaatcacaaagctggtggaggaag |
16488585 |
T |
|
| Q |
370 |
gaaagattaagcttatctcaggagccagaaacactcaaattccgtctcattgcttttacgcagatgatattatgatctactgcagagggaatcttgaaag |
469 |
Q |
| |
|
| || | ||| | || | || || ||||| | |||||| || || |||||||| || || |||||||||||||| || |||||||| ||| |||| | |
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|
| T |
16488586 |
gcaaagtcaagttaattactggtgcaagaaatattcaaataccttcacattgcttatatgcggatgatattatgatatattgcagaggaaattttgattg |
16488685 |
T |
|
| Q |
470 |
tttacaggctttgcagaatttattcactagatatgctaattgtgcggggcaggttattagtgccaggaaatcaactatcttcgcatgtggtat |
562 |
Q |
| |
|
| | | ||||| || ||| | ||| |||| ||||||||| |||| || |||||||||||||| || ||||| || || || ||| ||||||| |
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|
| T |
16488686 |
tcttgaagctttacacaatctcttctctaggtatgctaatagtgctggccaggttattagtgcaagaaaatctaccatatttgcaggtggtat |
16488778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 320
Target Start/End: Complemental strand, 34031306 - 34031205
Alignment:
| Q |
219 |
tcagcatctctttctatttcaattaatggtgtgcagcaaggttacttcaactgttctagaggagtccgacaaggtgatccattgtcgcctcttctttttt |
318 |
Q |
| |
|
|||||| ||||||| || ||||||||||||| ||||| || | ||| ||||| ||||||| || ||||||| ||||| ||||| ||| ||||||||| |
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|
| T |
34031306 |
tcagcaactctttcaatctcaattaatggtgcccagcatggatgctttcactgtgctagaggggtgagacaaggagatcccttgtcccctattctttttt |
34031207 |
T |
|
| Q |
319 |
gt |
320 |
Q |
| |
|
|| |
|
|
| T |
34031206 |
gt |
34031205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1019 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1019
Description:
Target: scaffold1019; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 860 - 799
Alignment:
| Q |
78 |
aaagcttatggtgggaatttagctttaaaaatcgacatcactaaagcttttgacactttaga |
139 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
860 |
aaagcttatggtggtaatctagctttaaaaatagacatcaccaaagcttttgatactttaga |
799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1036 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1036
Description:
Target: scaffold1036; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 2574 - 2508
Alignment:
| Q |
70 |
tggaaaagaaagcttatggtgggaatttagctttaaaaatcgacatcactaaagcttttgacacttt |
136 |
Q |
| |
|
|||| |||| |||||||||||||||| | ||||||||| | ||||||| |||||||||||||||||| |
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|
| T |
2574 |
tggataagagagcttatggtgggaatctcgctttaaaagtggacatcaataaagcttttgacacttt |
2508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 11413316 - 11413382
Alignment:
| Q |
70 |
tggaaaagaaagcttatggtgggaatttagctttaaaaatcgacatcactaaagcttttgacacttt |
136 |
Q |
| |
|
|||| |||| |||||||||||||||| | ||||||||| | ||||||| |||||||||||||||||| |
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|
| T |
11413316 |
tggataagagagcttatggtgggaatcttgctttaaaagtggacatcagtaaagcttttgacacttt |
11413382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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