View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_high_4 (Length: 594)
Name: NF12611_high_4
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 36128896 - 36129271
Alignment:
| Q |
19 |
aaatctgggaaccaactctccatgctggatctgatcttcaaaagtgcaagaacttcatcattagtccaaggatcaatgagttgaggaagtatttgtcttt |
118 |
Q |
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| T |
36128896 |
aaatctgggaaccaactctccatgctggatctgatcttcaaaagtgcaagaacttcatcattagtccaaggatcaatgagttgaggaagtatttgtcttt |
36128995 |
T |
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| Q |
119 |
gatctctgtcaatttggaagttgttcattgaaggtgtagagttttgttccttatcttcatcatctttgtgagggtgtaaagggtgcaagagaatattagg |
218 |
Q |
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| T |
36128996 |
gatctctgtcaatttggaagttgttcattgaaggtgtagagttttgttccttatcttcatcatctttgtgagggtgtaaagggtgcaagag---attagg |
36129092 |
T |
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| Q |
219 |
ttgaacttggagtggcaattggtgatgttgagaaggatggttttgttgattataaggatcaaaaggagggaaggtattgtttggtgttgaaagagggaaa |
318 |
Q |
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| T |
36129093 |
ttgaacttggagtggcaattggtgatgttgagaaggatggttttgttgattataaggatcaaaaggagggaaggtattgtttggtgttgaaagagggaaa |
36129192 |
T |
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| Q |
319 |
ggtaagtgaagaggtagtgatgatgaagaagttcttggagttatgaattggtggaattggtcagggactccatcataca |
397 |
Q |
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| T |
36129193 |
ggtaagtgaagaggtagtgatgatgaagaagttcttggagttatgaattggtggaattggtcagggactccatcataca |
36129271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 424 - 580
Target Start/End: Original strand, 36129302 - 36129458
Alignment:
| Q |
424 |
aaagactaaagaatacgctctcaactttacactaactcttcaattcaattcctatgctcactgtaaattaaatgagcaaaatgatatacaagcaaagcaa |
523 |
Q |
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| T |
36129302 |
aaagactaaagaatacgctctcaactttacactaactcttcaattcaattcctatgctcactgtaaattaaatgagcaaaatgatatacaagcaaagcaa |
36129401 |
T |
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| Q |
524 |
ctttacaaaaccctctacccttctctctatctatctatttctctgttttgtctctgc |
580 |
Q |
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| T |
36129402 |
ctttacaaaaccctctacccttctctctatctatctatttctctgttttgtctctgc |
36129458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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