View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_high_42 (Length: 250)
Name: NF12611_high_42
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2042179 - 2042415
Alignment:
| Q |
1 |
ttcagaatatcaaacacactactcgatacaagggtgatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttgcattgtcgttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2042179 |
ttcagaatatcaaacacactactcgatacaagggtgatcatatcaaacattactcattaagtttctcttttgaagcattaggagtgttgcattgtcgttc |
2042278 |
T |
|
| Q |
101 |
attctctccgactggggatgttatggtttgaaaaaattcgatggatgaggaaattcgatggggattttagggatctcctagaatatccaattctcgattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2042279 |
attctctccgactggggatgttatggtttgaaaaaattcgatggatgaggaaattcgatggggattttagggatctcctagaatatccaattctcgattc |
2042378 |
T |
|
| Q |
201 |
ccttaactcttttttatgttcttattgtcttttgtct |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2042379 |
ccttaactcttttttatgttcttattgtcttttgtct |
2042415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 5747191 - 5747061
Alignment:
| Q |
25 |
gatacaagggtgatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttgcattgtcgttcattct-ctccgactggggatgtta |
123 |
Q |
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||||||||||||| |||||||| | |||||||| |||||||||||||||||||||||| ||||||||||||| || |||| ||||||||| ||||||| |
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| T |
5747191 |
gatacaagggtgaacatatcaacc-ttactcatcaagtttctcttttggagcattagg-gtgttgcattgtcatttcttcttctccgactgtagatgtta |
5747094 |
T |
|
| Q |
124 |
tggtttgaaaaaattcgatggatgaggaaattc |
156 |
Q |
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||||||| |||||||||| ||||||| |||||| |
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| T |
5747093 |
tggtttggaaaaattcgacggatgagaaaattc |
5747061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 5784150 - 5784020
Alignment:
| Q |
25 |
gatacaagggtgatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttgcattgtcgttcattct-ctccgactggggatgtta |
123 |
Q |
| |
|
||||||||||||| |||||||| | |||||||| |||||||||||||||||||||||| ||||||||||||| || |||| ||||||||| ||||||| |
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| T |
5784150 |
gatacaagggtgaacatatcaacc-ttactcatcaagtttctcttttggagcattagg-gtgttgcattgtcatttcttcttctccgactgtagatgtta |
5784053 |
T |
|
| Q |
124 |
tggtttgaaaaaattcgatggatgaggaaattc |
156 |
Q |
| |
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||||||| |||||||||| ||||||| |||||| |
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| T |
5784052 |
tggtttggaaaaattcgacggatgagaaaattc |
5784020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 7816569 - 7816438
Alignment:
| Q |
26 |
atacaagggtgatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttgcattgtcgttcattc-tctccgactggggatgttat |
124 |
Q |
| |
|
|||||||||||| | |||||||||||||| || | |||||||||||||||||||||| ||||||||||||| || ||| |||||||||| ||||| | | |
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| T |
7816569 |
atacaagggtgaacgtatcaaacattactaatgatgtttctcttttggagcattaggggtgttgcattgtcattacttcttctccgactgaggatggttt |
7816470 |
T |
|
| Q |
125 |
ggtttgaaaaaattcgatggatgaggaaattc |
156 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| |
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|
| T |
7816469 |
ggtttgggaaaattcgacggatgaggaaattc |
7816438 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 48206081 - 48206149
Alignment:
| Q |
25 |
gatacaagggtgatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttgcatt |
93 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| | |||||||||| |
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|
| T |
48206081 |
gatacaagggtgaacatatcaaacattactcatgaagtttctcttttggagtattaagggtgttgcatt |
48206149 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 31150434 - 31150544
Alignment:
| Q |
30 |
aagggtgatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttgcattgtcgttcattc-tctccgactggggatgttatggtt |
128 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||||||||| |||||| |||| |||||||| ||| ||| |||||||| | ||||||||||||| |
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|
| T |
31150434 |
aagggtgatcatatcaaacattacacatgaagtttatcttttggaccattagaggtgtggcattgtcattccttcttctccgaccgaggatgttatggtt |
31150533 |
T |
|
| Q |
129 |
tgaaaaaattc |
139 |
Q |
| |
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||| ||||||| |
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|
| T |
31150534 |
tgagaaaattc |
31150544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 3117201 - 3117322
Alignment:
| Q |
36 |
gatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttgcattgtcgttcattc-tctccgactggggatgttatggtttgaaaa |
134 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||| ||||||| ||||||||||||| ||| ||| | | |||| |||||||||||||||| || |
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| T |
3117201 |
gatcatatcaaatattactcatgaaggctctcttttggatcattaggggtgttgcattgtcattctttcttgtttgactcgggatgttatggtttgggaa |
3117300 |
T |
|
| Q |
135 |
aattcgatggatgaggaaattc |
156 |
Q |
| |
|
|||| || ||||||| |||||| |
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|
| T |
3117301 |
aatttgacggatgagaaaattc |
3117322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 32706302 - 32706243
Alignment:
| Q |
30 |
aagggtgatcatatcaaacattactcattaagtttctcttttggagcattaggagtgttg |
89 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||||||||||||| ||||| | |||||| |
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|
| T |
32706302 |
aagggtgagcatatcaaacattactcttgaagtttctcttttggaacattaagtgtgttg |
32706243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 22977655 - 22977605
Alignment:
| Q |
30 |
aagggtgatcatatcaaacattactcattaagtttctcttttggagcattag |
81 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||| || ||||| |
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| T |
22977655 |
aagggtgaacatatcaaacattactca-taagtttctcttttgcagtattag |
22977605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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