View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_high_50 (Length: 214)
Name: NF12611_high_50
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 13848166 - 13848359
Alignment:
| Q |
7 |
ggagaagcagagacaattgtaagtgaaaagtttgaatcctgacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaaca |
106 |
Q |
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| T |
13848166 |
ggagaagtagagacaattgtaagggaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaaca |
13848265 |
T |
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| Q |
107 |
tgacagtagaagatggaggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttgttga |
200 |
Q |
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| T |
13848266 |
tgacagtagaagatggaggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttgttga |
13848359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 34343782 - 34343955
Alignment:
| Q |
24 |
tgtaagtgaaaagtttgaatcctgacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgacagtagaagatgga |
123 |
Q |
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| T |
34343782 |
tgtaagtgaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgacagtagaagatgga |
34343881 |
T |
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| Q |
124 |
ggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttgttga |
200 |
Q |
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| T |
34343882 |
ggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgact---tagtgtaggtcatttgttga |
34343955 |
T |
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