View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_high_52 (Length: 207)
Name: NF12611_high_52
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 23962266 - 23962442
Alignment:
| Q |
14 |
cagagaatatgggttgcttaattttcgtagatgtagatcaaataagaaaaatacataaaagtttataagctacaagagaaacatgaaacatgttcattga |
113 |
Q |
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| T |
23962266 |
cagagaatatgggttgcttaattttcctagatgtagatcaaataagaaaaacacataaaagtttataaggtacaagagcaacaagaaacatattcattga |
23962365 |
T |
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| Q |
114 |
actaacaaccctacctaggaattggaccacatatatctgattcattgatttcaatctgtatagagcccttgactgat |
190 |
Q |
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| T |
23962366 |
actaacaaccctacctaggaatcggaccacatatatctgattcattgatttcaatctgtatagagcccttgactgat |
23962442 |
T |
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Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 24001800 - 24001727
Alignment:
| Q |
117 |
aacaaccctacctaggaattggaccacatatatctgattcattgatttcaatctgtatagagcccttgactgat |
190 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24001800 |
aacaaccctacctaggatttggaccacatatatctgattcattgatttcaatctgcatagagcccttgactgat |
24001727 |
T |
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