View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_high_6 (Length: 568)
Name: NF12611_high_6
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 10873273 - 10873825
Alignment:
| Q |
1 |
tttcttttattgtattgaaatggtttatcggagtagatggcttaggaaccaatgtcaatgatgaagggataacattttacaacaacattatcaatgctct |
100 |
Q |
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| T |
10873273 |
tttcttttattgtattgaaatggtttatcggtgtagatggcttaggaaccaatgtcaatgatgaagggataacattttacaacaacattatcaatgctct |
10873372 |
T |
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| Q |
101 |
tcttgaaaaaggtattgtctacaaaaacctactttgcctttatatttttgtctcttctatcaaccatatatattaattcatttcccacaggtattcaacc |
200 |
Q |
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| T |
10873373 |
tcttgaaaaaggtattgtctacaaaaacctactttgccttaatatttttgtctcttctatcaaccatatatattaattcatttcccacaggtattcaacc |
10873472 |
T |
|
| Q |
201 |
ttttgtaactttgtaccattgggatcttccactgcatcttgatgagtcaatgggaggttggttgaacnnnnnnntcatgtaggtcatctaactgattatg |
300 |
Q |
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| T |
10873473 |
ttttgtaactttgtaccattgggatcttccactgcatcttgaagagtcaatgggaggttggttgaacaaaaaaatcatgtaggtcatctaactgagtatg |
10873572 |
T |
|
| Q |
301 |
gttagcaacttccttaggaagtatccgatacgaagtttgattattctcagcctgagcccaccattttgactatctattaaagttgttattggatctaccc |
400 |
Q |
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| T |
10873573 |
gttagcaacttccttaggaagtatccgataccaagtttgattattctcagcctgagcccaccattttgactatctattaaagttgttattggatctactc |
10873672 |
T |
|
| Q |
401 |
tcgaaattttctactaagtatgttcatttgtggcatgttgcagagaatattttgcagtctatgctgatacttgctttgcaagttttggcgatagagtgaa |
500 |
Q |
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| T |
10873673 |
tcgaaattttctactaagtatgtttatttgtggcatgttgcagagaatattttgcagtctatgcagatacttgctttgcaagttttggcgatagagtgaa |
10873772 |
T |
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| Q |
501 |
aaactggattactattaacgagccccttcaaaccgcagttggtgggtatgatg |
553 |
Q |
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| T |
10873773 |
aaactggattactattaacgagccccttcaaaccgcagttggtgggtatgatg |
10873825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 10859657 - 10859916
Alignment:
| Q |
10 |
ttgtattgaaatggtttatcggagtagatggcttaggaaccaatgtcaatgatgaagggataacattttacaacaacattatcaatgctcttcttgaaaa |
109 |
Q |
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| T |
10859657 |
ttgttttgtaatggtttatgggtgtagatggcttaggaaccaaagtcaatgatgaagggatagcattttacaacaacgttattaatgctcttctagaaag |
10859756 |
T |
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| Q |
110 |
aggtattgtctacaaaaacctactttgcctttatatttttgtctcttctatcaaccatatatatta----attcatttcccacaggtattcaaccttttg |
205 |
Q |
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| T |
10859757 |
aggtattgtctgtataaaactactttaccttaat-tttttatctcttctatcaaccgtatatattaagttactcctttccagcaggtattcaaccttatg |
10859855 |
T |
|
| Q |
206 |
taactttgtaccattgggatcttccactgcatcttgatgagtcaatgggaggttggttgaa |
266 |
Q |
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| T |
10859856 |
taactttgtaccattgggatcttccacttcatcttgacgagtcaatgggaggatggttgaa |
10859916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 421 - 552
Target Start/End: Original strand, 10860882 - 10861013
Alignment:
| Q |
421 |
tgttcatttgtggcatgttgcagagaatattttgcagtctatgctgatacttgctttgcaagttttggcgatagagtgaaaaactggattactattaacg |
520 |
Q |
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| T |
10860882 |
tgttcatttgttgcatgtggtagagaatactttgcagtctattcagaaacttgctttgcaagttttggtgatagagtgaagaactggattactatcaatg |
10860981 |
T |
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| Q |
521 |
agccccttcaaaccgcagttggtgggtatgat |
552 |
Q |
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| T |
10860982 |
agccccttcaaaccgcagttaatgggtatgat |
10861013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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