View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_10 (Length: 492)
Name: NF12611_low_10
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 21 - 410
Target Start/End: Original strand, 2624472 - 2624859
Alignment:
| Q |
21 |
caatgttttatccacttatcttttctctaccgcaatttaaaatattgtttctagcataaagagttcttacttgagctaaagcaaaagaaagaaactgcaa |
120 |
Q |
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| T |
2624472 |
caatgttttatccacttatcttttctctaccgcaatttaaaatattgtttctagcata--gagttcttacttgagctaaagcaaaagaaagaaactgcaa |
2624569 |
T |
|
| Q |
121 |
ctttagatcgagtaacatttgaacttcttgttctactgtcttcagcagtgattggttttgttttgttgataggatgattatggttaacaataaataaagc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624570 |
ctttagatcgagtaacatttgaacttcttgttctactgtcttcagcagtgattggttttgttttgttgataggatgattatggttaacaataaataaagc |
2624669 |
T |
|
| Q |
221 |
accaagacaaacaaaaacatagataccgagcactccaatatcacatagaaattgataataattttaaaaatagaagtgattaaatgtaacaacatgtgcc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624670 |
accaagacaaacaaaaacatagataccgagcactccaatatcacatagaaattgataataattttaaaaatagaagtgattaaatgtaacaacatgtgcc |
2624769 |
T |
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| Q |
321 |
aaatactgtgtaggtgttggacattgacacgtgccctacacttggcatgccttcaattgaaggtgtcaatgctaaaaatttataaactag |
410 |
Q |
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| T |
2624770 |
aaatactgtgtaggtgttggacattgacacgtgcccgacacttggcatgccttcaattgaaggtgtcaatgctaaatatttataaactag |
2624859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 32864781 - 32864828
Alignment:
| Q |
262 |
cacatagaaattgataataattttaaaaatagaagtgattaaatgtaa |
309 |
Q |
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| T |
32864781 |
cacatagtgattgatagtaattttaaaaatagaagtgattcaatgtaa |
32864828 |
T |
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