View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12611_low_12 (Length: 483)

Name: NF12611_low_12
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12611_low_12
NF12611_low_12
[»] chr3 (2 HSPs)
chr3 (118-464)||(22192387-22192733)
chr3 (15-77)||(22192324-22192386)
[»] chr5 (4 HSPs)
chr5 (15-117)||(27134060-27134162)
chr5 (193-297)||(27133877-27133982)
chr5 (403-446)||(158957-159000)
chr5 (403-446)||(18078823-18078866)
[»] chr4 (3 HSPs)
chr4 (15-117)||(26409955-26410057)
chr4 (208-297)||(26410152-26410242)
chr4 (403-471)||(26410353-26410421)
[»] chr1 (2 HSPs)
chr1 (15-108)||(21661189-21661282)
chr1 (403-455)||(24028410-24028462)
[»] chr8 (1 HSPs)
chr8 (403-455)||(32254394-32254446)
[»] chr2 (1 HSPs)
chr2 (402-446)||(22080620-22080664)


Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 118 - 464
Target Start/End: Original strand, 22192387 - 22192733
Alignment:
Q  118 atactgcttataacttatatacatttccattttatattgaaatttttctttcaaataatcatttgatgttggttgtcaagatgttataggagttgttcag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22192387 atactgcttataacttatatacatttccattttatattgaaatttttctttcaaataatcatttgatgttggttgtcaagatgttataggagttgttcag 22192486  T
Q  218 gacatgggctattgtcagctgaatgaagatactgggaaaaag-tccaggttaactttactatgaaagatctaaggtgaggacttaatgtcttcttggaca 316  Q
    |||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22192487 gacatgggctattgtcagctgaatgaaggta-tgggaaaaagctccaggttaactttactatgaaagatctaaggtggggacttaatgtcttcttggaca 22192585  T
Q  317 tttgatctttaaaacaattaaggggaactaggtttacctatcagatacgcataattataatgttcatgtgtttcaaatggatttgtagtgacatttctct 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22192586 tttgatctttaaaacaattaaggggaactaggtttacctatcagatacacataattataatgtttatgtgtttcaaatggatttgtagtgacatttctct 22192685  T
Q  417 taactgcactttgtgggaggattatgctgctatgtttattaaatacaa 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22192686 taactgcactttgtgggaggattatgctgctatgtttattaaatacaa 22192733  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 22192324 - 22192386
Alignment:
Q  15 gacatcaatgttcatgatgtcccaaagtctgacatcaaattcaagccatttgcagaaattatt 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22192324 gacatcaatgttcatgatgtcccaaagtctgacatcaaattcaagccatttgcagaaattatt 22192386  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 27134162 - 27134060
Alignment:
Q  15 gacatcaatgttcatgatgtcccaaagtctgacatcaaattcaagccatttgcagaaattatttcagggaaatggcgacctgatgtattagttagtgagt 114  Q
    |||||||||||||||||||| ||  | ||||||| |||||||||||| ||||| |||||||| || || ||||||  ||||||| | |||||||||||||    
T  27134162 gacatcaatgttcatgatgttcctcaatctgacaccaaattcaagccgtttgctgaaattatatctggaaaatggaaacctgatattttagttagtgagt 27134063  T
Q  115 tca 117  Q
    |||    
T  27134062 tca 27134060  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 27133982 - 27133877
Alignment:
Q  193 tcaagatgttataggagttgttcaggacatgggctattgtcagctgaatgaagatactggga-aaaagtccaggttaactttactatgaaagatctaagg 291  Q
    ||||||||  || |||||||||||||| ||||||| |||||| |||||  ||| |||||||| |||| ||||||| ||||||||||||||||| || |||    
T  27133982 tcaagatgccattggagttgttcaggaaatgggcttttgtcaactgaaccaaggtactgggaaaaaactccaggtcaactttactatgaaagaccttagg 27133883  T
Q  292 tgagga 297  Q
    ||||||    
T  27133882 tgagga 27133877  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 159000 - 158957
Alignment:
Q  403 agtgacatttctcttaactgcactttgtgggaggattatgctgc 446  Q
    ||||| |||||||||||||||||| | |||||||||||||||||    
T  159000 agtgatatttctcttaactgcactctttgggaggattatgctgc 158957  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 18078866 - 18078823
Alignment:
Q  403 agtgacatttctcttaactgcactttgtgggaggattatgctgc 446  Q
    ||||| |||||||||||||||||| | |||||||||||||||||    
T  18078866 agtgatatttctcttaactgcactctttgggaggattatgctgc 18078823  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 26409955 - 26410057
Alignment:
Q  15 gacatcaatgttcatgatgtcccaaagtctgacatcaaattcaagccatttgcagaaattatttcagggaaatggcgacctgatgtattagttagtgagt 114  Q
    |||||||||||||||||||| ||  | ||||||| |||||||||||| ||||| |||||||| || || ||||||  ||||||| | |||||||||||||    
T  26409955 gacatcaatgttcatgatgttcctcaatctgacaccaaattcaagccgtttgctgaaattatatctggaaaatggaaacctgatattttagttagtgagt 26410054  T
Q  115 tca 117  Q
    |||    
T  26410055 tca 26410057  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 297
Target Start/End: Original strand, 26410152 - 26410242
Alignment:
Q  208 agttgttcaggacatgggctattgtcagctgaatgaagatactgggaaaaag-tccaggttaactttactatgaaagatctaaggtgagga 297  Q
    |||||||||| | ||||||| |||||| |||||  ||| ||||||||||||  ||||||| ||||||||||||||||| || |||||||||    
T  26410152 agttgttcagaaaatgggcttttgtcaactgaaccaaggtactgggaaaaaactccaggtcaactttactatgaaagaccttaggtgagga 26410242  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 471
Target Start/End: Original strand, 26410353 - 26410421
Alignment:
Q  403 agtgacatttctcttaactgcactttgtgggaggattatgctgctatgtttattaaatacaacagtgaa 471  Q
    |||||||||||  ||||||||||||| ||||| || ||||||||   ||| |||||||| |||||||||    
T  26410353 agtgacatttcgattaactgcactttatgggaagaatatgctgcacagttcattaaatataacagtgaa 26410421  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 21661282 - 21661189
Alignment:
Q  15 gacatcaatgttcatgatgtcccaaagtctgacatcaaattcaagccatttgcagaaattatttcagggaaatggcgacctgatgtattagtta 108  Q
    |||||||||||||||||  | || |  ||||| | |||||||||||| ||||| ||||||||||| |||||||||||||||||| | |||||||    
T  21661282 gacatcaatgttcatgaaattcctatctctgaaaccaaattcaagccctttgctgaaattatttctgggaaatggcgacctgatattttagtta 21661189  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 455
Target Start/End: Complemental strand, 24028462 - 24028410
Alignment:
Q  403 agtgacatttctcttaactgcactttgtgggaggattatgctgctatgtttat 455  Q
    |||||||| ||  |||||||||||||||||||||| ||||||| || ||||||    
T  24028462 agtgacatctcaattaactgcactttgtgggaggagtatgctggtaggtttat 24028410  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 455
Target Start/End: Original strand, 32254394 - 32254446
Alignment:
Q  403 agtgacatttctcttaactgcactttgtgggaggattatgctgctatgtttat 455  Q
    |||||||| ||||||||||||||  |||||||||| |||||||| | ||||||    
T  32254394 agtgacatatctcttaactgcacactgtgggaggactatgctgcgaagtttat 32254446  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 22080664 - 22080620
Alignment:
Q  402 tagtgacatttctcttaactgcactttgtgggaggattatgctgc 446  Q
    ||||||||||||| | ||||||||| | |||||||||||||||||    
T  22080664 tagtgacatttctatcaactgcactctatgggaggattatgctgc 22080620  T

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