View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_15 (Length: 453)
Name: NF12611_low_15
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 53267988 - 53267548
Alignment:
| Q |
1 |
agtatagcaacaaatgtgtttagaaaaatcttcgattaaattagaactgaaataacaaactcaacgattggatcaaataaatatgtttacgtgtctagtg |
100 |
Q |
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| T |
53267988 |
agtatagcaacaaatgtgtttagaaaaatcttcgattaaattagaactgaaataacaaactcaacgattggatcaaataaatatgtttacgtgtctagtg |
53267889 |
T |
|
| Q |
101 |
agcatcatatcaaatttataatatgttcaatggaag----taggtaatgactatttatggcacctacatgaaagatcatgatattttgttgcttatcaat |
196 |
Q |
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| T |
53267888 |
agcatcatatcaaatttataatgtgttcaatggaaggaagtaggtaatgactatttatggcacctacatgaaagatcatgatattttgttgcttatcaat |
53267789 |
T |
|
| Q |
197 |
aatatttaaatctacctgtaagcctgtaacaataaccatattaatattattgggtagacgtttattcatgaaaattagtttttcattgttgataatgaca |
296 |
Q |
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| T |
53267788 |
a---tttaaatctacctgtaagcctgtaacaataaccatattaatattattgggtagacgtttattcatgaaaattagtttttcgttgttgataatgaca |
53267692 |
T |
|
| Q |
297 |
gcatatatacaatttaattttatgaagacaagtcacatgtacctttgtcacgcttgtttgaaaaacacctacttttaataaatttttacttcgaatgaac |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53267691 |
gcatatatacaatttaattttatgaagacaagtcacatgtacctttgt-acgcttgtttgaaaaacacctacttttaataaatttttacttcgaatgaac |
53267593 |
T |
|
| Q |
397 |
ttaagaactgatttaacattacaaaattgtgcatgtgaagttttt |
441 |
Q |
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| T |
53267592 |
ttaagaactgatttaacattacaaaattgtgcatgtgaagttttt |
53267548 |
T |
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