View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_17 (Length: 437)
Name: NF12611_low_17
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 11903676 - 11903255
Alignment:
| Q |
1 |
agtggctcaacaacagcgttcattgcattcggcctaaaaataaccaatcatttcaaagtcaagaaagccgcggaggagttcaaacgcttgaccgaggtgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11903676 |
agtggctcaacaacagcgttcattgcattcggcctaaaaataaccaatcatttcaaagtcaagaaagccgcggaggagttcaaacgcttgatcgaggtgg |
11903577 |
T |
|
| Q |
101 |
atttaaagggattgtgtttgtcaatatctcaagaagcagcagaagcagcaacagaaacagttaatagtaacatgaagaatgtcaaaagaaattttgagaa |
200 |
Q |
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| T |
11903576 |
atttaaagggattgtgtttgtcaatatctcaagaagcagcagaagcagcaacagaaacagttaatagtaacatgaagaatgtcaaaagaaattttgagaa |
11903477 |
T |
|
| Q |
201 |
aattaccatggttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctgatgatttcgttcctgttattgtcatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903476 |
aattaccatggttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctgatgatttcgttcctgttattgtcatt |
11903377 |
T |
|
| Q |
301 |
gttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatccgtt |
400 |
Q |
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| T |
11903376 |
gttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatccgtt |
11903277 |
T |
|
| Q |
401 |
ctctccatgaaacctttgatgt |
422 |
Q |
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| T |
11903276 |
ctctccatgaaacctttgatgt |
11903255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 220 - 396
Target Start/End: Original strand, 11730745 - 11730924
Alignment:
| Q |
220 |
gaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctgatgatttc---gttcctgttattgtcattgttggtgttcctggaa |
316 |
Q |
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||||| || ||||| ||| || ||||||||||||| || |||||||| || |||||||||| ||| |||| ||||||||||||||||||| |||| |
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| T |
11730745 |
gaaaaagagaagaaagagcttgtagatcaactacttaacttgaacaattctactgatgattttcatgttggtgtttttgtcattgttggtgttccgggaa |
11730844 |
T |
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| Q |
317 |
ttgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatc |
396 |
Q |
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| T |
11730845 |
tagggaagacaaaacttgcacggcttgtttgcgaggatgagcaagtcaaagcaaattttgggctacaaccaatttggatc |
11730924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 193 - 377
Target Start/End: Original strand, 11730274 - 11730461
Alignment:
| Q |
193 |
tttgagaaaattaccatggttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctgatgatttc---gttcctg |
289 |
Q |
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||||||||| |||| ||||||| |||||| |||| ||||| ||||||||||||| |||||| |||| || ||| || |||||| ||| ||| || |
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| T |
11730274 |
tttgagaaagttactgtggttggaagagaatatgagaagaaagagattatagatcgactacttaagtggatcaaatctactgatgcttttcatgttggtg |
11730373 |
T |
|
| Q |
290 |
ttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttgg |
377 |
Q |
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|| ||||||||||||||||| | ||||| || || |||||||||||| ||||||||||| | ||||| ||||||||||| ||||||| |
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| T |
11730374 |
tttttgtcattgttggtgtttcaggaataggaaagacaaaacttgcacgtcttgtttgcaaggatgagcaagtcaaagcaaattttgg |
11730461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 396
Target Start/End: Original strand, 11859136 - 11859234
Alignment:
| Q |
298 |
attgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatc |
396 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||| |||||||||| || ||||||| || ||||||||||| |
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| T |
11859136 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatc |
11859234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 396
Target Start/End: Original strand, 12037924 - 12038032
Alignment:
| Q |
288 |
tgttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaacca |
387 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||| || ||||| |||||| || ||||||| || ||||| |
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| T |
12037924 |
tgttattgttattgttggtgttcctggaattggcaaaacaaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaacca |
12038023 |
T |
|
| Q |
388 |
atttggatc |
396 |
Q |
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| T |
12038024 |
atttggatc |
12038032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 391
Target Start/End: Original strand, 11826968 - 11827061
Alignment:
| Q |
298 |
attgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaattt |
391 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||| ||||| || || || ||||||||||| |||||| ||||||| ||||| |
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| T |
11826968 |
attgttggtgttactggaattgggaaaacaaaacttgctcatctcgtttgtgaggacgagcaagtcaaagcgaattttgaattcgaacaaattt |
11827061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 11859049 - 11859104
Alignment:
| Q |
211 |
gttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaa |
266 |
Q |
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||||||||||||| || |||||||||||||||||| |||| |||||| ||||||| |
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| T |
11859049 |
gttggcagagaaagagagaagaaggagattatagataaactgctgaagatgaacaa |
11859104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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