View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_18 (Length: 427)
Name: NF12611_low_18
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 50572812 - 50573177
Alignment:
| Q |
1 |
acaactgcacttatctctgcttctggcatgatggtatgctctttggttgcacttgctcattgaagtgctttatgnnnnnnnaacattgtattccaatatt |
100 |
Q |
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| T |
50572812 |
acaactgcacttatctctgcttctggcatgatggtatgctctttggttgcacttgctcattgaagtgctttatgtttttttaacattgtattccaatatt |
50572911 |
T |
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| Q |
101 |
gtatgtgttgtttaacatataaccatatccctaatcattgttccttttgcaaaaccaaataatttggcatagtactttgaaggaattctgtttcttatgc |
200 |
Q |
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| T |
50572912 |
gtatgtgttgtttaacatataaccatatccctaatcagtgttccttttgcaaaaccaaataatttggcatagtactttgaaggaattctgtttcttatgc |
50573011 |
T |
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| Q |
201 |
tgttctaatttacctagatttgtatttgagcta----tgagcaacaatctaaattggcagcaagaaaggtgtgttcttgttcnnnnnnnggtttatcaca |
296 |
Q |
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| T |
50573012 |
tgttctaatttacctagatttgtatttgagctaaaagtgagcaacaatctaaattggcagcaagaaaggtgtgttcttgttctttttttggtttatcaca |
50573111 |
T |
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| Q |
297 |
ttcctactatgtatctatattatcgatgtcctccacttgaagttaattacactggaaaactaagcc |
362 |
Q |
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| T |
50573112 |
ttcctactatgtatctatattattgatgtcctccactcgaagttaattacactggaaaactaagcc |
50573177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 140 - 348
Target Start/End: Original strand, 50567120 - 50567334
Alignment:
| Q |
140 |
gttccttttgcaaaaccaaataatttggcatagtacttt-gaagg----aattctgtttcttatgctgttctaatttacctagatttgtatttgag-cta |
233 |
Q |
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| T |
50567120 |
gttcgttttgcaaaaccaaataatttcacattgtacttttgaagggttaatttctctttcttatgatgttgtaatttaactagatttgtactggaggcaa |
50567219 |
T |
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| Q |
234 |
tgagcaacaatctaaattggcagcaagaaaggtgtgttcttgttcnnnnnnnggtttatcacattcctactatgtatctatattatcgatgtcctccact |
333 |
Q |
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| T |
50567220 |
tgagaaacagtctaaattggctgcaaggaaggtgtgttcttgttcttttatctgtttatctcattcatgctatgtatgcatattatcgatgttctccact |
50567319 |
T |
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| Q |
334 |
tgaagttaattacac |
348 |
Q |
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| T |
50567320 |
cgaggttaatcacac |
50567334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 50566973 - 50567042
Alignment:
| Q |
2 |
caactgcacttatctctgcttctggcatgatggtatgctctttggttgcacttgctcattgaagtgcttt |
71 |
Q |
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| T |
50566973 |
caactgcacttatctattcttctgggaagatggtgtgctcttttgttgcaattgctcattgaagtgcttt |
50567042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 9986664 - 9986620
Alignment:
| Q |
234 |
tgagcaacaatctaaattggcagcaagaaaggtgtgttcttgttc |
278 |
Q |
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| T |
9986664 |
tgagcaacagtctaaattggcagcaaggaaggtgtgttcttgttc |
9986620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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