View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_20 (Length: 402)
Name: NF12611_low_20
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 35728015 - 35727650
Alignment:
| Q |
13 |
aagcagagaactgtagaagcatgtttaggttaataataaaaagtgtgacaaacttatccagcgtgatcaataacatacaatgatattcataagtttttat |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35728015 |
aagcaaagaactgtagaagcatgtttaggttaataataaaaagtgtgacaaactgatctagcgtgatcaataacatacaatgatattcataagtttttat |
35727916 |
T |
|
| Q |
113 |
agctgaatattatagtggacaatctcgcacaacgtgttagactggaagtagccggttttggctaaccaagataaatctcttgcgttttctttttaatatt |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35727915 |
agctgaatattatagtggacaatctcgcacaatgtgttagactggaagtagccagttttggctaaccaagataaatctcttgcgttttctttttaatatt |
35727816 |
T |
|
| Q |
213 |
tgctctaacactactcacacattttcacaatattaatctttattgataatctattcatgacattttggtactagctaaatataattacttaaaatctata |
312 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35727815 |
tgctttaacactactcacacattttcacaatattaatctttattgataatctattcatgacattttggtactagctaaatataattacttaaaatctata |
35727716 |
T |
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| Q |
313 |
ttcatccagattatcttgggtctaaatcaattattaatatcgtcccacatctaaattaatcataca |
378 |
Q |
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| T |
35727715 |
ttcatccagagtatcttgggtctaaatcaattattaatatcgtcccacatctaaattaatcataca |
35727650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 24564741 - 24564677
Alignment:
| Q |
75 |
gtgatcaataacatacaatgatattcataagttttta-tagctgaatattatagtggacaatctc |
138 |
Q |
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| T |
24564741 |
gtgatcaagaacatatagtgttattcagaagtttctagtagttgaatattatagtggacaatctc |
24564677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 30676848 - 30676912
Alignment:
| Q |
75 |
gtgatcaataacatacaatgatattcataagttt-ttatagctgaatattatagtggacaatctc |
138 |
Q |
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|||||||| |||||| | || ||||||||||||| ||||||||||||||| || |||| |||||| |
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| T |
30676848 |
gtgatcaagaacatatagtgctattcataagtttcttatagctgaatattgtaatggataatctc |
30676912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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