View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_23 (Length: 388)
Name: NF12611_low_23
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 24707604 - 24707242
Alignment:
| Q |
16 |
acatcattggaaatacaatattttgagtctgtaagaatctattgaggcattgtagaagaccataagcaaaaaggcatggaaccattaactttgcatagct |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||| | |
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| T |
24707604 |
acatcattggaaatacaatattttgagcctgtaagaatctgttgaggcattgtagaagaccatacgcaaaaagggatggaaccattaacctagcatagtt |
24707505 |
T |
|
| Q |
116 |
gccagcctctatagatatttcaggatcttggccaagtaaaataagaatagattttgtgtttgcccaaataatcgcgaggggaatcgcaacgatcataaga |
215 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24707504 |
gccagcttctatagatatttcaggatcttggccaagtaaaataagaatagattttgtgtttgcccaaataaccgcgaggggaatcgcaacgatcataaga |
24707405 |
T |
|
| Q |
216 |
atgaacattgctctctgcatgtgtacgcctaacatgcggtattgttttgcgccgtatgattgtccacataatgtgtccaaggcactggccattccttgct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24707404 |
atgaacattgctctctgcatgtgtacgcctaacatgcggtattgttttgcgccgtatgattgtccacataatgtgtccaaggcactggccattccttgct |
24707305 |
T |
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| Q |
316 |
atnnnnnnntaaaataaaccacgttaattttggacgaagcgacctgagctgaatttcagtgaa |
378 |
Q |
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|| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
24707304 |
ataaaaaaataaaataaaccacattaattttggacgaagcgacctgagctgaatctcagtgaa |
24707242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 30512181 - 30512543
Alignment:
| Q |
16 |
acatcattggaaatacaatattttgagtctgtaagaatctattgaggcattgtagaagaccataagcaaaaaggcatggaaccattaactttgcatagct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30512181 |
acatcattggaaatacaatattttgagtctgtaagaatctgttgaggcattgtagaagaccataagcaaaaaggcatggaaccattaactttgcatagct |
30512280 |
T |
|
| Q |
116 |
gccagcctctatagatatttcaggatcttggccaagtaaaataagaatagattttgtgtttgcccaaataatcgcgaggggaatcgcaacgatcataaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| | || ||||| ||| |||||||||||||||||| |||||||||||||||||||| ||| ||| |
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| T |
30512281 |
gccagcctctatagatatttcaggatcttggccaagcacaaggagaattgatcttgtgtttgcccaaataaccgcgaggggaatcgcaacgaccatgaga |
30512380 |
T |
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| Q |
216 |
atgaacattgctctctgcatgtgtacgcctaacatgcggtattgttttgcgccgtatgattgtccacataatgtgtccaaggcactggccattccttgct |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
30512381 |
atgaacattgctctctgcatgtgtacgcctaacatgcggtattgtttcgcgccatatgattgtccacaaaatgtgtccaaggcacttgccattccttgct |
30512480 |
T |
|
| Q |
316 |
at----nnnnnnntaaaataaaccacgttaattttggacgaagcgacctgagctgaatttcag |
374 |
Q |
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|| ||||||||||| | |||||||||||||||| |||| ||||||||| |||| |
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| T |
30512481 |
ataaaaaataaaataaaataaaccgcattaattttggacgaagtgaccagagctgaatctcag |
30512543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 30484722 - 30485017
Alignment:
| Q |
16 |
acatcattggaaatacaatattttgagtctgtaagaatctattgaggcattgtagaagaccataagcaaaaaggcatggaaccattaactttgcatagct |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||| |
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| T |
30484722 |
acatcattggaaatacaatattttgagtctgtaagaatctgttgagacattgtagaagaccgtaagcaaaaaggcagggaaccattaacttagcatagct |
30484821 |
T |
|
| Q |
116 |
gccagcctctatagatatttcaggatcttggccaagtaaaataagaatagattttgtgtttgcccaaataatcgcgaggggaatcgcaacgatcataaga |
215 |
Q |
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||||| || ||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||| || |||||||| ||| |
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| T |
30484822 |
tccagcttcagtagatatttcaagatcttggccaagtaaaatcagaatggatcttgtgtttgcccagataatcgcgaggggaatggcgacgatcatgaga |
30484921 |
T |
|
| Q |
216 |
atgaacattgctctctgcatgtgtacgcctaacatgcggtattgttttgcgccgtatgattgtccacataatgtgtccaaggcactggccattcct |
311 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||| || |||||||| |||||||||||||||||||| || |||||||| ||||||||| |
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| T |
30484922 |
atgaacattgctctttgcatgtgtatgcctaacatgcggtactgctttgcgccatatgattgtccacataatgtatctaaggcacttgccattcct |
30485017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 30502534 - 30502828
Alignment:
| Q |
16 |
acatcattggaaatacaatattttgagtctgtaagaatctattgaggcattgtagaagaccataagcaaaaaggcatggaaccattaactttgcatagct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| | |
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| T |
30502534 |
acatcattggaaatacaatattttgagtttgtaagaatctgttgaggcattgtaggagaccataagcaaaaagggatggaaccattaacttagcatagtt |
30502633 |
T |
|
| Q |
116 |
gccagcctctatagatatttcaggatcttggccaagtaaaataagaatagattttgtgtttgcccaaataatcgcgaggggaatcgcaacgatcataaga |
215 |
Q |
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||||||||| ||||||||||| ||||||| ||||| ||||| ||||| ||| | ||||||||||||||||| ||||| ||||||||||| ||||| ||| |
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| T |
30502634 |
gccagcctccatagatatttcgtgatcttgtccaaggaaaatgagaatggatctagtgtttgcccaaataatagcgagaggaatcgcaacaatcatgaga |
30502733 |
T |
|
| Q |
216 |
atgaacattgctctctgcatgtgtacgcctaacatgcggtattgttttgcgccgtatgattgtccacataatgtgtccaaggcactggccattcc |
310 |
Q |
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|||||||| ||||| |||||||||| ||||| ||||||||| || |||||||| ||||| || ||||||||||||||||||||||| |||||||| |
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| T |
30502734 |
atgaacatggctctttgcatgtgtatgcctagcatgcggtactgctttgcgccatatgactggccacataatgtgtccaaggcacttgccattcc |
30502828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 32264013 - 32263937
Alignment:
| Q |
216 |
atgaacattgctctctgcatgtgtacgcctaacatgcggtattgttttgcgccgtatgattgtccacataatgtgtc |
292 |
Q |
| |
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|||||||| |||| ||||||||| |||| ||||| ||||| ||||||||||| |||| || ||||||| ||||||| |
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| T |
32264013 |
atgaacatgactctttgcatgtgtgcgcccaacatacggtactgttttgcgccatatgtttatccacatgatgtgtc |
32263937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 14092245 - 14092165
Alignment:
| Q |
231 |
tgcatgtgtacgcctaacatgcggtattgttttgcgccgtatgattgtccacataatgtgtccaaggcactggccattcct |
311 |
Q |
| |
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||||||| ||| ||||||||| ||||||||||| || |||| |||||||||||| || || || ||||| ||||||||| |
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| T |
14092245 |
tgcatgtatactcctaacatgtaatattgttttgctccatatgcttgtccacataaagtttctaatgcacttgccattcct |
14092165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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