View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12611_low_24 (Length: 377)
Name: NF12611_low_24
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 36324677 - 36325025
Alignment:
| Q |
18 |
aatactatcctgcatctcgatggcaatcgcggcaatcatagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgttccaggagtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36324677 |
aatactatcctgcatctcgatggcaatcgcggcaatcatagaagtgaaaagaaaaaatgtagctagagataataacatgcttgatgctgttccaggagtt |
36324776 |
T |
|
| Q |
118 |
caaccattacctttgagtatattttggctttcttttcagtactttgtatttggtatagctgatatgtttacctatgtgggacttcttgagttcttctatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36324777 |
caaccattacctttgagtatattttggctttcttttcagtactttgtatttggtatagctgatatgtttacctatgtgggacttcttgagttcttctatt |
36324876 |
T |
|
| Q |
218 |
cagaagcaccaaaagggcttaaatctacttcaacatgctttctttggagctctatggcacttggctattttctaagcagcattatggtgcaaattgtgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36324877 |
cagaagcaccaaaagggcttaaatctacttcaacatgctttctttggagctctatggcacttggctattttctaagcagcattatggtgcaaattgtgaa |
36324976 |
T |
|
| Q |
318 |
tagtgctaccaagaatgttactgcaagtgggggatggttggcagtgaac |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
36324977 |
tagtgctaccaagaatgttactgcaagtggtggatggttggcagggaac |
36325025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 36331938 - 36332286
Alignment:
| Q |
18 |
aatactatcctgcatctcgatggcaatcgcggcaatcatagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgttccaggagtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36331938 |
aatactatcctgcatctcgatggcaattgcagcaatcatagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgttccaggagtt |
36332037 |
T |
|
| Q |
118 |
caaccattacctttgagtatattttggctttcttttcagtactttgtatttggtatagctgatatgtttacctatgtgggacttcttgagttcttctatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36332038 |
caaccattacctttgagtatattttggctttcttttcagtactttgtgtttggtatagctgatatgtttacctatgtgggacttcttgagttcttctatt |
36332137 |
T |
|
| Q |
218 |
cagaagcaccaaaagggcttaaatctacttcaacatgctttctttggagctctatggcacttggctattttctaagcagcattatggtgcaaattgtgaa |
317 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36332138 |
cagaggcaccaaaagggcttaaatctacatcaacatgcttcctttggagctctatggcacttggctattttctaagcagcattatggtgcaaattgtgaa |
36332237 |
T |
|
| Q |
318 |
tagtgctaccaagaatgttactgcaagtgggggatggttggcagtgaac |
366 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
36332238 |
taatgctaccaagaatgttactgcaagtggtggatggttggcagggaac |
36332286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 293
Target Start/End: Original strand, 5459971 - 5460214
Alignment:
| Q |
50 |
caatcatagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattttggctttc |
149 |
Q |
| |
|
|||| |||||||| |||||||||| || || | ||||||||||||||||||||| | |||| | ||| ||||| ||| | || | |||||||||||| |
|
|
| T |
5459971 |
caattatagaagtaaaaagaaaaagagtggccaatgacaataacatgcttgatgctttaccagtatatcagccattgcctataagcacattttggctttc |
5460070 |
T |
|
| Q |
150 |
ttttcagtactttgtatttggtatagctgatatgtttacctatgtgggacttcttgagttcttctattcagaagcaccaaaagggcttaaatctacttca |
249 |
Q |
| |
|
||||||||| || ||||||| |||||||| || || |||||| | || || ||| |||| ||||||||||| ||||||||||| ||||||||||| ||| |
|
|
| T |
5460071 |
ttttcagtatttcatatttggcatagctgacatattcacctatattggtctccttcagtttttctattcagaggcaccaaaaggacttaaatctacatca |
5460170 |
T |
|
| Q |
250 |
acatgctttctttggagctctatggcacttggctattttctaag |
293 |
Q |
| |
|
|| ||||| ||||||| || ||||||||||| ||||||||||| |
|
|
| T |
5460171 |
acttgcttcctttggacttcaatggcacttggatattttctaag |
5460214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University