View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12611_low_25 (Length: 376)

Name: NF12611_low_25
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12611_low_25
NF12611_low_25
[»] chr3 (5 HSPs)
chr3 (1-358)||(28918489-28918846)
chr3 (4-83)||(28905487-28905566)
chr3 (4-85)||(28895101-28895182)
chr3 (4-72)||(28928243-28928311)
chr3 (4-83)||(28938827-28938906)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 28918489 - 28918846
Alignment:
Q  1 ttgaccaccatctttgcaagaaaagcaacaaccttcagcaatctcttccttctttcttttgttattctttttcaccatttttgctgctaaaacctttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28918489 ttgaccaccatctttgcaagaaaagcaacaaccttcagcaatctcttccttctttcttttgttattctttttcaccatttttgctgctaaaacctttgaa 28918588  T
Q  101 actcaagaacgctgatcaagaaatgagagagtaaagaaagaagaggtacctaccttgtaaggaaccttaatgaaagtgacagaagatcattattactatg 200  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28918589 actcaagaacattgatcaagaaatgagagagtaaagaaagaagaggtacctaccttgtaaggaaccttaatgaaagtgacaaaagatcattattactatg 28918688  T
Q  201 ctacaaatgcatgcaactctccaaaacactttagtactaacctaaacactttttaggaaatctgacgtaaaagtcaatattttccttttccaattcagta 300  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  28918689 ctacagatgcatgcaactctccaaaacactttagtactaacctatacactttttaggaaatctgacgtaaaagtcaatatttcccttttccaattcagca 28918788  T
Q  301 taaagtactgtgggaatatctcaattcaattatcaaacataattaattaacctaaaag 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28918789 taaagtactgtgggaatatctcaattcaattatcaaacataattaattaacctaaaag 28918846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 28905487 - 28905566
Alignment:
Q  4 accaccatctttgcaagaaaagcaacaaccttcagcaatctcttccttctttcttttgttattctttttcaccatttttg 83  Q
    ||||||||||||||||  ||||||| || ||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  28905487 accaccatctttgcaaacaaagcaataatcttcagcaatctcttccttttttcttttgttgttctttttcaccatttttg 28905566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 28895101 - 28895182
Alignment:
Q  4 accaccatctttgcaagaaaagcaacaaccttcagcaatctcttccttctttcttttgttattctttttcaccatttttgct 85  Q
    ||||||||||||||||  ||||||| ||| |||||||||||||||||| ||||||||||| |||||| || |||||||||||    
T  28895101 accaccatctttgcaaataaagcaaaaactttcagcaatctcttccttttttcttttgttgttctttctccccatttttgct 28895182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 28928243 - 28928311
Alignment:
Q  4 accaccatctttgcaagaaaagcaacaaccttcagcaatctcttccttctttcttttgttattcttttt 72  Q
    ||||||||||||||||  |||||| ||  ||||||| ||||||||||| ||||||||||||||||||||    
T  28928243 accaccatctttgcaaacaaagcaccattcttcagcgatctcttccttttttcttttgttattcttttt 28928311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 28938827 - 28938906
Alignment:
Q  4 accaccatctttgcaagaaaagcaacaaccttcagcaatctcttccttctttcttttgttattctttttcaccatttttg 83  Q
    |||||||||||||||  |||||||| || ||||||  || ||||||||  |||||||||| ||| ||||| |||||||||    
T  28938827 accaccatctttgcagaaaaagcaataatcttcagagatttcttcctttcttcttttgttgttccttttccccatttttg 28938906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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