View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_27 (Length: 372)
Name: NF12611_low_27
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 13743758 - 13744104
Alignment:
| Q |
14 |
acatcatgtttgagtgattaggaatagggattattgtaataatagaatgtgtgagtggagagacgataatggagtctatgggtgagttggtttaaaatat |
113 |
Q |
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| T |
13743758 |
acatcatgtttgagtgattaggaatagggattattgtaataatagaatgtgtgagtggagagacgataacggagtctatgggtgagttggtttaaaatat |
13743857 |
T |
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| Q |
114 |
aagggaaaactagggaagtctatggggaagggggtattaagggttcttttgctgcccttggaagtgttgcttattaagnnnnnnnnnnnnnnnnttattt |
213 |
Q |
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| T |
13743858 |
aagggaaaactagggaagtctatggggaagggggtattaagggttcttttgctgcccttggaagtgttgcttattaagttttttttaaaaaaaaatattt |
13743957 |
T |
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| Q |
214 |
ctcgtctattatgtttgtaattttcttgtattgagccactggatttcttcttcc-ttgttcacccaacaacagtgggaatcattctatttcatttttata |
312 |
Q |
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| T |
13743958 |
ctcgtctattatgtttgtaattttcttgtattgagccactggatttcttcttcctttgttcacccaacaacagtgggaatcattctatttcatttttata |
13744057 |
T |
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| Q |
313 |
ttacttaattttccaaaccaaattaccggttttctaacgttacctct |
359 |
Q |
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| T |
13744058 |
ttacttaattttccaaaccaaattaccggttttctaacgttacctct |
13744104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 52269514 - 52269334
Alignment:
| Q |
18 |
catgtttgagtgattaggaatagggattattgtaataatagaatgtgtgagtggagagacgataatggagtctatgggtga--------gttggtttaaa |
109 |
Q |
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| T |
52269514 |
catgtttgcgtgattaggaatagggattattgtaataatagaatgtgtgaatggagagaagataacggagtctatgggtgaatgggtgagttggtttaaa |
52269415 |
T |
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| Q |
110 |
atataagggaaaactagggaagtctatggggaagggggtattaagggttcttttgctgcccttggaagtgttgcttattaa |
190 |
Q |
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| T |
52269414 |
atataagggaaagctagggaagtctaaggggaaggaggtattaagggttcttttgctgcccttggaagtgttgcttattaa |
52269334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 52269310 - 52269204
Alignment:
| Q |
208 |
ttatttctcgtctattatgtttgtaattttcttgtattgagccactggatttcttcttcc-ttgttcacccaacaacagtgggaatcattctatttcatt |
306 |
Q |
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||||||||| |||||||||||||| |||||||||| ||| |||||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||| | |
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| T |
52269310 |
ttatttctcttctattatgtttgtcattttcttgtcgcgagtcactggatttcttcctcctttgttcacccaacaacagtgggaataatt-tatttcaat |
52269212 |
T |
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| Q |
307 |
tttatatt |
314 |
Q |
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|||||||| |
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| T |
52269211 |
tttatatt |
52269204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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