View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_3 (Length: 681)
Name: NF12611_low_3
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 6 - 665
Target Start/End: Original strand, 1885478 - 1886136
Alignment:
| Q |
6 |
agaagcaaaggatacaccaaacaatggcagatggagaatattatttatttgacaacatttcagcttatcaaattcgcagaacacctctgatttctaccgc |
105 |
Q |
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| T |
1885478 |
agaaacaaaggatacaccaaacaatggcagatggagaatattatttatttgacaacatttcagcttatcaaattcgcagaacacctctgatttctaccgc |
1885577 |
T |
|
| Q |
106 |
gcagcaagatagatgtgtgtggaaacttgagaaaaacagtatctattccgttcgtagcgcatacaggagcatcatggaaaaggatgtaaattctcatcag |
205 |
Q |
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| T |
1885578 |
gcagcaagatagatgtgtgtggaaacttgagaaaaacagtatctattccgttcgtagcgcatacaggagcatcatggaaaaggatgtaaattctcatcag |
1885677 |
T |
|
| Q |
206 |
cacggaattgatggtaattggaagcaaatttggcgcaacaaaatacttccacgggattaagaactttctttggcgagttactcgcgaatttcttccaaca |
305 |
Q |
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| T |
1885678 |
cacggaattgatggtaattggaagcaaatttggcgcaacaaaatacttccacgggattaagaactttctttggcgagttactcgcgaatttcttccaaca |
1885777 |
T |
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| Q |
306 |
aagggttcgactgcaggctaacggagtcaattgaacccaacagtgtccgttctataatgaccacgaagacaacatgcacacattatttctatgtggcaaa |
405 |
Q |
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| T |
1885778 |
aagggttcgactgcaggctaacggagtcaattgaacccaacagtgtccgttctataatgaccacgaagacaacatgcacacattatttctatgtggcaaa |
1885877 |
T |
|
| Q |
406 |
atcgcccaatgttggcaggtgctgggtctttgttaagacataactgttgcgattttgaatccaggtgatatctcctctattatttttgcaattctgcatc |
505 |
Q |
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| T |
1885878 |
atcgcccaatgttggcagctgctgggtctttgttaagacataactgttgcgattttgaatccaggtgatatctcctcta-tatttttgcaattctgcatc |
1885976 |
T |
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| Q |
506 |
gtttagagccctcacaacagccaatctttagcacgctgatgtggatcatttgaaaaaatagaaataatatggaatgatacctcagacaagtgtcaggtta |
605 |
Q |
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| T |
1885977 |
gtttagagccctcacaacagccaatctttagcacgctgatgtggatcatttgaaaaaatagaaataatatggaatgatacctcagacaagtgtcaggtta |
1886076 |
T |
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| Q |
606 |
tctgtgatagagccacgatgttgttttcaagttggaagaatgctcaggaggtaaaacaaa |
665 |
Q |
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| T |
1886077 |
tctgtgatagagccacgatgttgttttcaagttggaagaatgctcaggaggtaaaacaaa |
1886136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 36256769 - 36256820
Alignment:
| Q |
523 |
cagccaatctttagcacgctgatgtggatcatttgaaaaaatagaaataata |
574 |
Q |
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| T |
36256769 |
cagccaatctttagcacacttatgttgagcatttggaaaaatagaaataata |
36256820 |
T |
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