View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_31 (Length: 363)
Name: NF12611_low_31
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 190 - 320
Target Start/End: Complemental strand, 32764874 - 32764747
Alignment:
| Q |
190 |
gggttcaaatatggattagttagttattctaaagctgcatatgcttgatagcttgatattgaattttttagtatttgctcaccactaactgaaatattcc |
289 |
Q |
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| T |
32764874 |
gggttcaaatatggattagtt---tattctaaagttgcacatgcttgatagcttgatattgaattttttagtatttgctcaccactaactgaaatattcc |
32764778 |
T |
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| Q |
290 |
ctttcaaccatgaattca-tttaggccgtgtt |
320 |
Q |
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| T |
32764777 |
ctttccaac-tgaattcattttaggccgtgtt |
32764747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 157 - 320
Target Start/End: Complemental strand, 32753494 - 32753330
Alignment:
| Q |
157 |
aggaactaatctttcacccttgtaaacaattac-gggttcaaatatggattagttagttattctaaagctgcatatgcttgatagcttgatattgaattt |
255 |
Q |
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| T |
32753494 |
aggaactaatttttcatccctgtaaactaatattgggtgcaaatatggatta-ttagttattttaaagttgcccatgtttgatagcttgatagtgcattt |
32753396 |
T |
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| Q |
256 |
tttagtatttgctcaccactaactgaaatattccctttcaaccatgaattc-atttaggccgtgtt |
320 |
Q |
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|||| |||||| || |||||||| |||||||||||||| | ||| ||||| |||||||||||||| |
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| T |
32753395 |
tttactatttgtacaacactaacttaaatattccctttccaacattaattcaatttaggccgtgtt |
32753330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 32754106 - 32754017
Alignment:
| Q |
3 |
gcctatttgtcaaaagaaatctgtaaaaaagtgataccgaaaacttggctactgtattctgaactgagtatgtttagattgagttgtttt |
92 |
Q |
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||||||||||| || ||||||||| |||| | ||||| ||||||||| |||||||||||||||| |||||||||||||||||| |||| |
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| T |
32754106 |
gcctatttgtcgaacgaaatctgtgaaaatataataccaaaaacttggatactgtattctgaacttcgtatgtttagattgagttttttt |
32754017 |
T |
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