View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_32 (Length: 359)
Name: NF12611_low_32
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 53319202 - 53319525
Alignment:
| Q |
19 |
aagtatgctcaatgaactcagacactttttatatccattaaccatcaaataaactttattttttgtgtgaatatatcaacccaaactttattttctgtta |
118 |
Q |
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| T |
53319202 |
aagtatgctcaatgaactcagacacttt-------cattaaacatcaaataaactttattttttgtgtgaatatatcaacccaaactttattttctgtta |
53319294 |
T |
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| Q |
119 |
accacgtatttaaattattataaaaaagggtaaataacataaacaacatacttgtaggcatctacaagaactcaacttgtatttatttattgtttctttt |
218 |
Q |
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| T |
53319295 |
accacgtatttaaattattataaaaaagggtaaataacataaacaacatacttgtaggcatctacaagaactcaacttgtatttatttattgtttctttt |
53319394 |
T |
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| Q |
219 |
catttatctacacagctaatacaaaaggacttcgaacagtatatttaccattactccatgtaatggatccaaacaaatcttccttcattgaggttaaa-- |
316 |
Q |
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| T |
53319395 |
catttatctacacagctaatacaaaaggacttcgaacagtatatttaccattactccatgtaatggatccaaacaaatcttccttcattgaggttaaagt |
53319494 |
T |
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| Q |
317 |
gtggaggagaaaataatttggtagctcagtg |
347 |
Q |
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| T |
53319495 |
gtggaggagaaaataatttggtagcttagtg |
53319525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 141 - 342
Target Start/End: Complemental strand, 48375449 - 48375244
Alignment:
| Q |
141 |
aaaaagggtaaataacataaacaaca--tactt--gtaggcatctacaagaactcaacttgtatttatttattgtttcttttcatttatctacacagcta |
236 |
Q |
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| T |
48375449 |
aaaatgggtaaataacatacacaacacataattaagtaagcatctacaagaacttagcttgtatttatttatcgtttctttccatttagctacatagtta |
48375350 |
T |
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| Q |
237 |
atacaaaaggacttcgaacagtatatttaccattactccatgtaatggatccaaacaaatcttccttcattgaggttaaagtggaggagaaaataatttg |
336 |
Q |
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| T |
48375349 |
gtacaaaaggacttcgaacactatatttaccgttactccatgtaatggatccaaacagatcttccttcaacgaggttaaagtagtagagaaaatagcttg |
48375250 |
T |
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| Q |
337 |
gtagct |
342 |
Q |
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|||||| |
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| T |
48375249 |
gtagct |
48375244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 181 - 342
Target Start/End: Original strand, 53422448 - 53422609
Alignment:
| Q |
181 |
tacaagaactcaacttgtatttatttattgtttcttttcatttatctacacagctaatacaaaaggacttcgaacagtatatttaccattactccatgta |
280 |
Q |
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| T |
53422448 |
tacaagagctcaacttgtatttatttatcgtttcttttcatttagctacggagatagtacaaaaggacttcgaacactatatttatcatttctccatgta |
53422547 |
T |
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| Q |
281 |
atggatccaaacaaatcttccttcattgaggttaaagtggaggagaaaataatttggtagct |
342 |
Q |
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| T |
53422548 |
atggatccaaagagatcatcgttcagcgggattaaagtgtaggagaaaataacttggtagct |
53422609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 194 - 342
Target Start/End: Original strand, 26094811 - 26094959
Alignment:
| Q |
194 |
cttgtatttatttattgtttcttttcatttatctacacagctaatacaaaaggacttcgaacagtatatttaccattactccatgtaatggatccaaaca |
293 |
Q |
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| T |
26094811 |
cttgtatttattaattgtttcttttcatttagctacacagttagtacaaaaggacttcgaacactatacttaccacttctccaagtaatgaatccaaata |
26094910 |
T |
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| Q |
294 |
aatcttccttcattgaggttaaagtggaggagaaaataatttggtagct |
342 |
Q |
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| T |
26094911 |
gatcttccttgagtgatgttaaattagaggagaaaataacttgatagct |
26094959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 342
Target Start/End: Original strand, 53307259 - 53307419
Alignment:
| Q |
181 |
tacaagaactcaacttgtatttatttatt----gtttcttttcatttatctacacagctaatacaaaaggacttcgaacagtatatttaccattactcca |
276 |
Q |
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| T |
53307259 |
tacaagaactaaacttgtatttatttatttatcgtttcttttcatttaattacacggttaatacaaaaggactccgaacattatatttcccattactcc- |
53307357 |
T |
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| Q |
277 |
tgtaatggatccaaacaaatcttccttcattgaggttaaagtggaggagaaaataatttggtagct |
342 |
Q |
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| T |
53307358 |
----atggatccaaacaaatcttcttttagagagggtaaagtacacgagaaaataatttggcagct |
53307419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 53430471 - 53430555
Alignment:
| Q |
238 |
tacaaaaggacttcgaacagtatatttaccattactccatgtaatggatccaaacaaatcttccttcattgaggttaaagtggag |
322 |
Q |
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||||||||||||||||||| |||||||| |||| |||||||||||||||||||| | ||||||||| | ||||||||| ||||| |
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| T |
53430471 |
tacaaaaggacttcgaacactatatttatcatttctccatgtaatggatccaaatagatcttcctttagcgaggttaaattggag |
53430555 |
T |
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