View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_34 (Length: 349)
Name: NF12611_low_34
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 19024175 - 19024463
Alignment:
| Q |
13 |
cacagacagagaatctaaagtgaaattcttaggggaggtgattgtgttaccacttcaagttctctcccaccaccgtgagtcagtcgtcaacgttccgaag |
112 |
Q |
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| T |
19024175 |
cacaaacagagaatctaaagtgaaattcttaggggaggtgattgtgttaccacttcaagttctctcccaccaccgtgagtcagatatcaacgttccgaag |
19024274 |
T |
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| Q |
113 |
ccctttacctc--ccgttgcttgaacttcaatattacacatgttttagttgttgttgtagaatcaactcccttgcaacnnnnnnnntaaataaggaatac |
210 |
Q |
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| T |
19024275 |
ccctttacctcaaccgttg-ttgaacttcaatattacacatgctttagttgttgttgtagaatcaactcccttgcaacaaaaa----aaataaggaatac |
19024369 |
T |
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| Q |
211 |
gaatctagaaaaacaatcaaataagcaaatgaagacatatgggtctggaaattggttctttcctattcaccattaacacaagttaaatttactt |
304 |
Q |
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| T |
19024370 |
aaatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaatttattctttcctattcaccaataacacaagttaaatttactt |
19024463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 75 - 287
Target Start/End: Original strand, 24414033 - 24414243
Alignment:
| Q |
75 |
tctcccaccaccgtgagtcagtcgtcaacgttccgaagccctttacctc--ccgttgcttgaacttcaatattacacatgttttagttgttgttgtagaa |
172 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||| || || |||| ||| |||||||||| |
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| T |
24414033 |
tctcccaccaccgtgagtcagtcgccaacgttccaaagccctttacctcaaccgttgcttcaacttcaatattagacgtgctttaattgctgttgtagaa |
24414132 |
T |
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| Q |
173 |
tcaactcccttgcaacnnnnnnnntaaataaggaatacgaatctagaaaaacaatcaaataagcaaatgaagacatatgggtctggaaattggttctttc |
272 |
Q |
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|||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
24414133 |
tcaactcccttgcaacaaaaa----aaataaggaatacaaatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaattggttcttgc |
24414228 |
T |
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| Q |
273 |
ctattcaccattaac |
287 |
Q |
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|||||||||| |||| |
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| T |
24414229 |
ctattcaccaataac |
24414243 |
T |
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