View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_36 (Length: 326)
Name: NF12611_low_36
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_36 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 117 - 326
Target Start/End: Complemental strand, 14659950 - 14659738
Alignment:
| Q |
117 |
tccatttaaataacccaatgatttatcaacgcgtgtaacactatattaattaatgcgcataagtttgagtctataatagtgttatactatgactgatgaa |
216 |
Q |
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| T |
14659950 |
tccatttaaataacccaatgatttatcaacgcgtttaacactatattaattaatgcgcataagtttgagtctataatagtgttataatatgactgatgaa |
14659851 |
T |
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| Q |
217 |
atttgttatgtgcactgtccacaagtccaaagggagaatatatacaaaagattagtatattgggtga---aatcctagcataataagtcggttgagtata |
313 |
Q |
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| T |
14659850 |
atttgttatgtgcactgtgcacaagtccaaagggagaatatatacaaaagattagtatattgggtgaaagaatcctaggataataagtcggttgagtata |
14659751 |
T |
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| Q |
314 |
aaatgaacccata |
326 |
Q |
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| T |
14659750 |
aaatgaatccata |
14659738 |
T |
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