View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12611_low_37 (Length: 290)

Name: NF12611_low_37
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12611_low_37
NF12611_low_37
[»] chr3 (4 HSPs)
chr3 (39-282)||(5381378-5381621)
chr3 (39-282)||(13721145-13721388)
chr3 (122-201)||(24341603-24341682)
chr3 (10-41)||(5381242-5381273)
[»] scaffold0015 (2 HSPs)
scaffold0015 (39-282)||(27560-27803)
scaffold0015 (10-41)||(27424-27455)
[»] chr8 (2 HSPs)
chr8 (39-282)||(88286-88529)
chr8 (10-41)||(88634-88665)
[»] chr7 (4 HSPs)
chr7 (39-282)||(11713140-11713383)
chr7 (39-280)||(13162351-13162592)
chr7 (10-41)||(11713488-11713519)
chr7 (10-41)||(13162697-13162728)
[»] chr1 (4 HSPs)
chr1 (39-282)||(42377158-42377401)
chr1 (39-282)||(14474908-14475151)
chr1 (39-282)||(2795158-2795401)
chr1 (10-41)||(14474772-14474803)
[»] chr6 (2 HSPs)
chr6 (41-282)||(16775804-16776045)
chr6 (13-41)||(16775669-16775697)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 39 - 282
Target Start/End: Original strand, 5381378 - 5381621
Alignment:
Q  39 tctaacttctttaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 138  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5381378 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 5381477  T
Q  139 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5381478 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 5381577  T
Q  239 atcataaattggctctaacacttcttctttttctggttcatctc 282  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  5381578 atcataaattggctctaaaacttcttctttttctggttcatctc 5381621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 39 - 282
Target Start/End: Original strand, 13721145 - 13721388
Alignment:
Q  39 tctaacttctttaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 138  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||||||||||||    
T  13721145 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacctttccagtagtggtgcaacgagtatgga 13721244  T
Q  139 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 238  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13721245 aaatgtttttcctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcaacaacaatgagctcttc 13721344  T
Q  239 atcataaattggctctaacacttcttctttttctggttcatctc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13721345 atcataaattggctctaacacttcttctttttctggttcatctc 13721388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 24341603 - 24341682
Alignment:
Q  122 ggtgcaacgagtatggaaaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatca 201  Q
    ||||||||||||||| ||||| |||||||||||  ||||||||||||| ||||||||| ||||||| |||| | ||||||    
T  24341603 ggtgcaacgagtatgaaaaatgtttttcctcaagtaatgctcttcttgtgctgacatcatgtgtagccttcctatgatca 24341682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 5381242 - 5381273
Alignment:
Q  10 gacatcacaccaaacttgatcttgatacttct 41  Q
    ||||||||||||||||||||||||||||||||    
T  5381242 gacatcacaccaaacttgatcttgatacttct 5381273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 39 - 282
Target Start/End: Original strand, 27560 - 27803
Alignment:
Q  39 tctaacttctttaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 138  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27560 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 27659  T
Q  139 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 238  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27660 aaatgtttttcctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 27759  T
Q  239 atcataaattggctctaacacttcttctttttctggttcatctc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27760 atcataaattggctctaacacttcttctttttctggttcatctc 27803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 27424 - 27455
Alignment:
Q  10 gacatcacaccaaacttgatcttgatacttct 41  Q
    ||||||||||||||||||||||||||||||||    
T  27424 gacatcacaccaaacttgatcttgatacttct 27455  T

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Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 39 - 282
Target Start/End: Complemental strand, 88529 - 88286
Alignment:
Q  39 tctaacttctttaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 138  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  88529 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 88430  T
Q  139 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 238  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88429 aaatgtttttcctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 88330  T
Q  239 atcataaattggctctaacacttcttctttttctggttcatctc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  88329 atcataaattggctctaacacttcttctttttctggttcatctc 88286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 88665 - 88634
Alignment:
Q  10 gacatcacaccaaacttgatcttgatacttct 41  Q
    ||||||||||||||||||||||||||||||||    
T  88665 gacatcacaccaaacttgatcttgatacttct 88634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 39 - 282
Target Start/End: Complemental strand, 11713383 - 11713140
Alignment:
Q  39 tctaacttctttaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 138  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11713383 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 11713284  T
Q  139 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 238  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11713283 aaatgtttttcctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 11713184  T
Q  239 atcataaattggctctaacacttcttctttttctggttcatctc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11713183 atcataaattggctctaacacttcttctttttctggttcatctc 11713140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 39 - 280
Target Start/End: Complemental strand, 13162592 - 13162351
Alignment:
Q  39 tctaacttctttaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 138  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  13162592 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataatatcacaaacttttccagcagtggtgcaacgagtatgga 13162493  T
Q  139 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 238  Q
      || |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13162492 tgatgtttttcgtcaaccaatgctcttcttgggctgacatcgcgtgtaggcttcgtctgaacaccagagactcgccatgatcagcaacaatgagctcttc 13162393  T
Q  239 atcataaattggctctaacacttcttctttttctggttcatc 280  Q
    ||||||||||||||||||| || | ||||||||  |||||||    
T  13162392 atcataaattggctctaactctacatctttttcatgttcatc 13162351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 11713519 - 11713488
Alignment:
Q  10 gacatcacaccaaacttgatcttgatacttct 41  Q
    ||||||||||||||||||||||||||||||||    
T  11713519 gacatcacaccaaacttgatcttgatacttct 11713488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 13162728 - 13162697
Alignment:
Q  10 gacatcacaccaaacttgatcttgatacttct 41  Q
    ||||||||||||||||||||||||||||||||    
T  13162728 gacatcacaccaaacttgatcttgatacttct 13162697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 39 - 282
Target Start/End: Complemental strand, 42377401 - 42377158
Alignment:
Q  39 tctaacttctttaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 138  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42377401 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 42377302  T
Q  139 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 238  Q
    |||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42377301 aaatgtttttcctcaaccaatactcttcttgagctgacatcgcgtgtaggcttcgtctgatcactagagactcgccatgatcagcaacaatgagctcttc 42377202  T
Q  239 atcataaattggctctaacacttcttctttttctggttcatctc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42377201 atcataaattggctctaacacttcttctttttctggttcatctc 42377158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 39 - 282
Target Start/End: Original strand, 14474908 - 14475151
Alignment:
Q  39 tctaacttctttaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 138  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |    
T  14474908 tctaaattctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccagcagtggtgcaacgagtatgaa 14475007  T
Q  139 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 238  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14475008 aaatgtttttgctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 14475107  T
Q  239 atcataaattggctctaacacttcttctttttctggttcatctc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14475108 atcataaattggctctaacacttcttctttttctggttcatctc 14475151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 39 - 282
Target Start/End: Original strand, 2795158 - 2795401
Alignment:
Q  39 tctaacttctttaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 138  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  2795158 tctaacttctccaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccggcagtggtgcaacgagtatgga 2795257  T
Q  139 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 238  Q
    |||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2795258 aaatgtttttcctcaacaaatgttcttcttgagctgacatcgcgtgtaggcttcgtctgatcactagagactcgccatgatcagcaacaatgagctcttc 2795357  T
Q  239 atcataaattggctctaacacttcttctttttctggttcatctc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2795358 atcataaattggctctaacacttcttctttttctggttcatctc 2795401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 14474772 - 14474803
Alignment:
Q  10 gacatcacaccaaacttgatcttgatacttct 41  Q
    ||||||||||||||||||||||||||||||||    
T  14474772 gacatcacaccaaacttgatcttgatacttct 14474803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 41 - 282
Target Start/End: Original strand, 16775804 - 16776045
Alignment:
Q  41 taacttctttaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatggaaa 140  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16775804 taacttctctaccatgtagttcgacaccacattttcaaaactaccactatctattataacatcacaaacttttccagcagtggtgcaacgagtatggaaa 16775903  T
Q  141 atatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttcat 240  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  16775904 atgtttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtcttatcactagagattcgccatgatcagcaacaatgagctcttcat 16776003  T
Q  241 cataaattggctctaacacttcttctttttctggttcatctc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16776004 cataaattggctctaacacttcttctttttctggttcatctc 16776045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 16775669 - 16775697
Alignment:
Q  13 atcacaccaaacttgatcttgatacttct 41  Q
    |||||||||||||||||||||||||||||    
T  16775669 atcacaccaaacttgatcttgatacttct 16775697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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