View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_38 (Length: 289)
Name: NF12611_low_38
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_38 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 44949679 - 44949415
Alignment:
| Q |
1 |
tagagaaataaaccttcctactactgtgttgaataaatccctaaaggcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaaacaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44949679 |
tagagaaataaaccttcctactactgtgttgaataaatccctaaaggcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaaacgaa |
44949580 |
T |
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| Q |
101 |
gatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcatttttatagtgatgggaagcttgatatgggttttatagatg |
200 |
Q |
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| T |
44949579 |
gatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcatttttatagtgatgggaagcttgatacgggttttatagatg |
44949480 |
T |
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| Q |
201 |
ctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatggatgtttg |
265 |
Q |
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| T |
44949479 |
ctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatggatgtttg |
44949415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 65 - 265
Target Start/End: Complemental strand, 6470464 - 6470264
Alignment:
| Q |
65 |
agtatggtaaaggaagttcctaacattcaaaacaaagatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcattttt |
164 |
Q |
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| T |
6470464 |
agtatggtaaaggaacttccttccattaaaaacaaaggtataaagatctacatgggaacagaatttgagccttcgaaggatataactggtgggcattttt |
6470365 |
T |
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| Q |
165 |
atagtgatgggaagcttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatggatgttt |
264 |
Q |
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| T |
6470364 |
acagtgaagggagtcttgatacggtttttatagacgctctaaagcaaacgtgcctgcaatgcatttcattggagagagtttccacatgtgatggatgttt |
6470265 |
T |
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| Q |
265 |
g |
265 |
Q |
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| T |
6470264 |
g |
6470264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 44943734 - 44943626
Alignment:
| Q |
157 |
gcatttttatagtgatgggaagcttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgat |
256 |
Q |
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|||||||||| |||||||||| ||||||| || ||| |||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||| || |
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| T |
44943734 |
gcatttttatggtgatgggaaacttgatacggttttgatagatactctaaagaatgtgtacttgaaatgcattttcatgcagaaagtttccacatgtaat |
44943635 |
T |
|
| Q |
257 |
ggatgtttg |
265 |
Q |
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||||||||| |
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| T |
44943634 |
ggatgtttg |
44943626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 44943804 - 44943742
Alignment:
| Q |
47 |
gcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaaacaaagatataaag |
109 |
Q |
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| T |
44943804 |
gcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaaacaaaggtataaag |
44943742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 65 - 265
Target Start/End: Original strand, 419220 - 419420
Alignment:
| Q |
65 |
agtatggtaaaggaagttcctaacattcaaaacaaagatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcattttt |
164 |
Q |
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||||||||||||||| ||||| |||| ||||||||| ||||||| |||||||| | ||||| |||||||||| ||||||| |||||||||||||||| |
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| T |
419220 |
agtatggtaaaggaacttccttccattaaaaacaaaggtataaagatctacatgggaacagaatttgagccttcgaaggatataactggtgggcattttt |
419319 |
T |
|
| Q |
165 |
atagtgatgggaagcttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatggatgttt |
264 |
Q |
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| || || |||| ||||||| || ||||||||||||||||||||| ||||||| ||||||||| | || | |||||||||||||||||||||||| |
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| T |
419320 |
acagcgaagggagtcttgatacggtttttatagatgctctaaagaaaacgtgcttgcaatgcatttcattacagagagtttccacatgtgatggatgttt |
419419 |
T |
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| Q |
265 |
g |
265 |
Q |
| |
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| T |
419420 |
g |
419420 |
T |
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