View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_39 (Length: 288)
Name: NF12611_low_39
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 39913146 - 39913402
Alignment:
| Q |
18 |
gtatgacgttcttgtgaccccaatcacctattagtttagtgaatttgtgcttcgcaactacatagtgcaaacaaagttaccaaaataacacagctatgcc |
117 |
Q |
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| T |
39913146 |
gtatgacgttcttgtgaccccaatcacttattagtttagtgaatttgtgcttcgcaactacatagtgcaaacaaagttaccaaaataacacagctatgcc |
39913245 |
T |
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| Q |
118 |
caaaaattatgtgcatttccacatttggtctgaatttcaacatacatgcatggtagttagtttgtaacaactgtaaagaacaaattgaatatggcacctt |
217 |
Q |
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| T |
39913246 |
caaaaattatgtgcatttccacatttggtctgaatttcaacatacatgcatggtagttcgtttgtaacaactgtaaagaacaaattgaatatggcacctt |
39913345 |
T |
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| Q |
218 |
ttgtcacagagtacttatcctcgatttgattaactactttcaaagtaaactctacat |
274 |
Q |
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| T |
39913346 |
ttgtcacagagtacttatactcgatttgattaactactttcaaagtaaactctacat |
39913402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 39900525 - 39900593
Alignment:
| Q |
74 |
actacatagtgcaaacaaagttaccaaaataacacagctatgcccaaaaattatgtgcatttccacatt |
142 |
Q |
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| T |
39900525 |
actacatagtgcaaacaaagttaccaaaataacacagctatgcccaaaaattatgtgcatttccacatt |
39900593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 283
Target Start/End: Original strand, 39901292 - 39901423
Alignment:
| Q |
152 |
tttcaacatacatgcatggtagttagtttgtaacaactgtaaagaacaaattgaatatggcaccttttgtcacagagtacttatcctcgatttgattaac |
251 |
Q |
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| T |
39901292 |
tttcaacatacatgcatggtagttcgtttgtaacaactgcaagtaacaaactgaataaggtaccttttgtcaaattgtactcatccttgatttgattaac |
39901391 |
T |
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| Q |
252 |
tactttcaaagtaaactctacatctctgctcc |
283 |
Q |
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| T |
39901392 |
tactctaaaactaaactgtacacatctgctcc |
39901423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 39733978 - 39733922
Alignment:
| Q |
78 |
catagtgcaaacaaagttaccaaaataacacagctatgcccaaaaattatgtgcattt |
135 |
Q |
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| T |
39733978 |
catagtacaaacaaagttacaaaaataacacagctttgcccaaaaa-tatgtgcattt |
39733922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 39867127 - 39867174
Alignment:
| Q |
88 |
acaaagttaccaaaataacacagctatgcccaaaaattatgtgcattt |
135 |
Q |
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| T |
39867127 |
acaaagtcacaaaaataatgcagctatgcccaaaaattatgtgcattt |
39867174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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