View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_41 (Length: 285)
Name: NF12611_low_41
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 15343931 - 15343680
Alignment:
| Q |
16 |
agcagagagccccaactattgatctgccagcacatgatcaagacagtgcgcatatcggtagcttatctcacctaaggtcatctagagtaaaggttgacct |
115 |
Q |
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| T |
15343931 |
agcagagagccccaactgttgatctgccaacacatgatcaagacagtgcgcatagcggtagcttatctcacctaaggtcatctagagtaaaggttgacct |
15343832 |
T |
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| Q |
116 |
ccacgaatggacatgcatgacggtgctcaacatacggggccatggtaacactcaccatatccaactgatccagatgctctatgtatcgtctggtgtagac |
215 |
Q |
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| T |
15343831 |
ccacgaatggacatgcatgacggtgctcaacatacggggccatgataacactcaccaaatccaactgatctagatgctctatgtatcgtctggtgtagac |
15343732 |
T |
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| Q |
216 |
gtacccctgaacgatatatacatcatggcacatggatgttgaagttcctgat |
267 |
Q |
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| T |
15343731 |
gtacccctgaacgatatatacatcatggcacatggatgctgaagttcctgat |
15343680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 5729054 - 5729001
Alignment:
| Q |
201 |
tcgtctggtgtagacgtacccctgaacgatatatacatcatggcacatggatgt |
254 |
Q |
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| T |
5729054 |
tcgtctggtgtagacatacccctgagcggtagatacatcatggcgcatggatgt |
5729001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 54454630 - 54454700
Alignment:
| Q |
174 |
atccaactgatccagatgctctatgta-tcgtctggtgtagacgtacccctgaacgatatatacatcatgg |
243 |
Q |
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| T |
54454630 |
atccaactgatccagatggtctatgtactcgtatggtgcaaacatacccctgagcggtataaacatcatgg |
54454700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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