View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12611_low_43 (Length: 278)

Name: NF12611_low_43
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12611_low_43
NF12611_low_43
[»] chr3 (17 HSPs)
chr3 (19-240)||(28937353-28937573)
chr3 (23-134)||(14755005-14755118)
chr3 (119-240)||(25648013-25648139)
chr3 (95-232)||(14280182-14280324)
chr3 (117-233)||(50518721-50518842)
chr3 (120-226)||(4171075-4171186)
chr3 (19-202)||(4170966-4171162)
chr3 (120-233)||(14893261-14893379)
chr3 (121-233)||(33143584-33143700)
chr3 (96-159)||(41039463-41039527)
chr3 (95-232)||(48892986-48893129)
chr3 (35-232)||(37123618-37123818)
chr3 (20-92)||(25594336-25594406)
chr3 (119-169)||(14194260-14194310)
chr3 (122-161)||(25594217-25594256)
chr3 (182-235)||(823027-823080)
chr3 (128-169)||(1652577-1652617)
[»] chr5 (22 HSPs)
chr5 (21-240)||(25992233-25992457)
chr5 (19-239)||(33258515-33258740)
chr5 (95-233)||(26405180-26405324)
chr5 (30-236)||(33109831-33110047)
chr5 (19-232)||(26045596-26045824)
chr5 (18-236)||(8297693-8297922)
chr5 (20-164)||(14302150-14302303)
chr5 (95-169)||(30097637-30097713)
chr5 (117-239)||(7391623-7391752)
chr5 (122-235)||(13953876-13953996)
chr5 (42-233)||(10174924-10175128)
chr5 (129-169)||(31742504-31742544)
chr5 (131-166)||(24071965-24072000)
chr5 (137-227)||(27713421-27713515)
chr5 (123-227)||(5187276-5187385)
chr5 (129-177)||(6159827-6159874)
chr5 (122-204)||(7682886-7682973)
chr5 (117-160)||(37108127-37108170)
chr5 (135-169)||(23426646-23426680)
chr5 (130-168)||(31722012-31722050)
chr5 (19-64)||(31742384-31742428)
chr5 (129-169)||(8731278-8731318)
[»] chr1 (24 HSPs)
chr1 (19-236)||(27102413-27102634)
chr1 (21-233)||(11439652-11439877)
chr1 (19-169)||(32882587-32882747)
chr1 (116-233)||(9312972-9313094)
chr1 (60-234)||(46768437-46768627)
chr1 (19-169)||(34775092-34775252)
chr1 (117-236)||(4431003-4431127)
chr1 (167-236)||(7451890-7451959)
chr1 (96-221)||(52278589-52278717)
chr1 (116-233)||(31290653-31290775)
chr1 (123-168)||(16149110-16149155)
chr1 (127-169)||(376507-376549)
chr1 (129-168)||(2987824-2987863)
chr1 (30-81)||(9313104-9313155)
chr1 (167-233)||(9557290-9557357)
chr1 (19-94)||(16148996-16149070)
chr1 (131-166)||(42374526-42374561)
chr1 (20-89)||(10785252-10785319)
chr1 (129-174)||(19598990-19599036)
chr1 (171-240)||(10605082-10605151)
chr1 (98-161)||(32863255-32863320)
chr1 (129-169)||(50588973-50589014)
chr1 (19-94)||(31290805-31290878)
chr1 (19-94)||(41126275-41126350)
[»] chr7 (18 HSPs)
chr7 (19-233)||(1321015-1321241)
chr7 (21-240)||(42532884-42533117)
chr7 (134-240)||(28534130-28534240)
chr7 (123-240)||(3478683-3478804)
chr7 (33-124)||(36674726-36674816)
chr7 (116-233)||(16954816-16954937)
chr7 (116-232)||(16828733-16828854)
chr7 (95-232)||(33719271-33719413)
chr7 (142-233)||(6726051-6726147)
chr7 (128-233)||(8745469-8745578)
chr7 (143-240)||(47456699-47456800)
chr7 (128-240)||(36674809-36674926)
chr7 (137-232)||(48058306-48058405)
chr7 (122-169)||(6716437-6716484)
chr7 (19-78)||(6716538-6716597)
chr7 (122-169)||(26385858-26385904)
chr7 (122-162)||(25438690-25438731)
chr7 (132-160)||(13312180-13312208)
[»] chr2 (21 HSPs)
chr2 (21-233)||(41086436-41086648)
chr2 (18-236)||(7696183-7696413)
chr2 (91-233)||(37770285-37770429)
chr2 (116-204)||(13337577-13337670)
chr2 (19-232)||(34230423-34230648)
chr2 (44-233)||(4974990-4975194)
chr2 (44-233)||(4992898-4993102)
chr2 (19-94)||(12343040-12343113)
chr2 (44-207)||(41113398-41113573)
chr2 (133-236)||(33788255-33788362)
chr2 (116-233)||(22884746-22884869)
chr2 (123-233)||(29997279-29997394)
chr2 (167-233)||(1269835-1269900)
chr2 (19-160)||(10173289-10173440)
chr2 (116-233)||(33533376-33533504)
chr2 (122-169)||(4472276-4472323)
chr2 (132-169)||(27740331-27740368)
chr2 (43-88)||(33533507-33533552)
chr2 (167-227)||(10772908-10772968)
chr2 (129-169)||(25504589-25504629)
chr2 (167-207)||(37559839-37559879)
[»] chr4 (19 HSPs)
chr4 (95-233)||(41117600-41117744)
chr4 (19-236)||(38636863-38637092)
chr4 (122-240)||(28967208-28967330)
chr4 (127-233)||(42719494-42719605)
chr4 (126-204)||(22810834-22810916)
chr4 (19-233)||(49747749-49747977)
chr4 (19-91)||(22810949-22811019)
chr4 (20-69)||(12296381-12296429)
chr4 (97-169)||(16832721-16832794)
chr4 (42-167)||(19311069-19311203)
chr4 (128-169)||(48098645-48098686)
chr4 (42-94)||(52009083-52009135)
chr4 (118-165)||(25754204-25754251)
chr4 (122-161)||(39420745-39420784)
chr4 (117-167)||(41231445-41231494)
chr4 (167-236)||(9262826-9262895)
chr4 (121-169)||(38930120-38930169)
chr4 (19-76)||(48098556-48098613)
chr4 (133-169)||(35336914-35336950)
[»] chr6 (4 HSPs)
chr6 (19-233)||(20701430-20701661)
chr6 (119-233)||(3880244-3880363)
chr6 (118-227)||(6860360-6860476)
chr6 (131-169)||(17278163-17278201)
[»] scaffold0050 (1 HSPs)
scaffold0050 (42-227)||(36951-37150)
[»] chr8 (11 HSPs)
chr8 (19-169)||(17656437-17656597)
chr8 (19-169)||(10248266-10248427)
chr8 (123-232)||(12197708-12197822)
chr8 (123-232)||(12442136-12442250)
chr8 (95-169)||(8862322-8862399)
chr8 (145-233)||(43312287-43312378)
chr8 (21-94)||(43312424-43312497)
chr8 (122-162)||(2273759-2273799)
chr8 (132-168)||(5215008-5215044)
chr8 (129-165)||(10552609-10552645)
chr8 (129-169)||(30235817-30235857)
[»] scaffold0063 (2 HSPs)
scaffold0063 (117-169)||(58456-58508)
scaffold0063 (19-94)||(58349-58424)
[»] scaffold1384 (1 HSPs)
scaffold1384 (22-169)||(1352-1513)
[»] scaffold0119 (1 HSPs)
scaffold0119 (128-233)||(41802-41911)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 28937573 - 28937353
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtggattttggtgggtgttgtcattggg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28937573 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcactttcgtgaaggggtctgttttaggtggattttggtgggtgttgtcattggg 28937474  T
Q  119 gtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcctttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggtt 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28937473 gtgtttttagggtgtttattttcgggtgttccgcttatatacggcg-ctttgtattctcaatttcaccggtctctcttcgtcttgaacagagatctggtt 28937375  T
Q  219 gtttaataatatttgctgattc 240  Q
     |||||||||||||||||||||    
T  28937374 atttaataatatttgctgattc 28937353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 14755118 - 14755005
Alignment:
Q  23 gtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtggattttggtgggtgttgtcat--tggggt 120  Q
    |||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| |  | ||||    
T  14755118 gtagcggcgatggatggtattagatatcgtttttacaatggtcgctttcgtgaaggggtctgttttaggtggattttgatgggtgttgtctttatagggt 14755019  T
Q  121 gtttttagggtgtt 134  Q
    ||||||||||||||    
T  14755018 gtttttagggtgtt 14755005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 25648013 - 25648139
Alignment:
Q  119 gtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatc 213  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||     |||||||||| | |||||||| ||||| |||||||||||||  |||     
T  25648013 gtgtttttagggtgtttattttcgggtgttccgtctatatactgcgccttttgtttgtattcttagtttcaccgatctctgttcgtcttgaacagggatt 25648112  T
Q  214 tggttgtttaataatatttgctgattc 240  Q
     ||||||||||| | ||||||||||||    
T  25648113 aggttgtttaattaaatttgctgattc 25648139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 14280324 - 14280182
Alignment:
Q  95 attttggtgggtgttgtcattggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggt 189  Q
    ||||| |||||||||||| |  || | |||| || ||||||| |||||||||||||||||||||||||||||     |||||||| ||| ||||| || |    
T  14280324 attttagtgggtgttgtcctcaggatattttcagagtgtttactttcgggtgttccgcctatatacggcgcctttaatttgtattatcagtttcatcgat 14280225  T
Q  190 ctctcttcgtcttgaacaaagatctggttgtttaataatattt 232  Q
    || | |||||||||| |||||||||| ||||||||||||||||    
T  14280224 ctttgttcgtcttgagcaaagatctgattgtttaataatattt 14280182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 50518842 - 50518721
Alignment:
Q  117 gggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaaga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||     |||||||||||| ||||||| |||||| |||||||||| ||  ||    
T  50518842 gggtgtttttagggtgtttattttcgggtgttccgcctatatacgacaccttttgtttgtattctcagtttcaccagtctctgttcgtcttgagcaggga 50518743  T
Q  212 tctggttgtttaataatatttg 233  Q
    ||   ||||||||||| |||||    
T  50518742 tcaaattgtttaataaaatttg 50518721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 4171075 - 4171186
Alignment:
Q  120 tgtttttagggtgtttattttcgggtgttccgcctatatacggcgccttt-----gtattctcaatttcaccggtctctcttcgtcttgaacaaagatct 214  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||     ||||||||| |||||||||||||| |||||||| | ||  ||| |    
T  4171075 tgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctttagcagggattt 4171174  T
Q  215 ggttgtttaata 226  Q
     |||||||||||    
T  4171175 agttgtttaata 4171186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 4170966 - 4171162
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtg--ga-------ttttggtgggtgtt 109  Q
    |||||||||| |||||| ||||  |||||||| ||| |||| |||||  ||||||||||| ||||||||||||||  ||       |||| |||||||||    
T  4170966 gtgagtagtgacgatggatggt--tggatatcatttatacaatggtcattttcgtgaaggagtctattttaggtgatgacgtatattttttgtgggtgtt 4171063  T
Q  110 gtcat-tggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtctt 202  Q
    ||| |    | |||||||||||||||||||||| ||||||||||||||||||| ||||     |||||||||||| |||||||||||||| ||||||||    
T  4171064 gtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctgttcgtctt 4171162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 120 - 233
Target Start/End: Original strand, 14893261 - 14893379
Alignment:
Q  120 tgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatct 214  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |     |||||| ||||  ||||||| |||||| ||| |||||| ||   ||||    
T  14893261 tgtttttagggtgtttattttcaggtgttccgcctatatacggcgtcttttgtttgtactctcggtttcaccagtctctgttcatcttgagcagttatct 14893360  T
Q  215 ggttgtttaataatatttg 233  Q
    ||||||||||||| |||||    
T  14893361 ggttgtttaataaaatttg 14893379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 33143700 - 33143584
Alignment:
Q  121 gtttttagggtgtttattttcgggtgttccgcctatatacggcgccttt-----gtattctcaatttcaccggtctctcttcgtcttgaacaaagatctg 215  Q
    |||||| |||||||| ||||||||||||||||||||||| | |||||||     ||||||||| |||||||| | | | |||| ||||| || |||||||    
T  33143700 gttttttgggtgttt-ttttcgggtgttccgcctatatatgacgccttttggttgtattctcagtttcaccgatttatgttcgccttgagcagagatctg 33143602  T
Q  216 gttgtttaataatatttg 233  Q
    |||||||||||| |||||    
T  33143601 gttgtttaataaaatttg 33143584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 41039463 - 41039527
Alignment:
Q  96 ttttggtgggtgttgtcattg-gggtgtttttagggtgtttattttcgggtgttccgcctatata 159  Q
    ||||||||||||||||| |   ||||||||||||||||||||||||| |||||||||||||||||    
T  41039463 ttttggtgggtgttgtcttcacgggtgtttttagggtgtttattttctggtgttccgcctatata 41039527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 48893129 - 48892986
Alignment:
Q  95 attttggtgggtgttgtcatt-ggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccgg 188  Q
    |||||||||||||||||| |  ||||||||||||  |||||||||||||| |||||| | ||||||||||  |     |||||||||||| ||||| | |    
T  48893129 attttggtgggtgttgtcttcaggggtgtttttaaagtgtttattttcggatgttcctcttatatacggcatcgtttgtttgtattctcagtttcatctg 48893030  T
Q  189 tctctcttcgtcttgaacaaagatctggttgtttaataatattt 232  Q
    ||| | |||||||||| ||  ||||| |||||||||||| ||||    
T  48893029 tctttgttcgtcttgagcagggatctagttgtttaataaaattt 48892986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 232
Target Start/End: Original strand, 37123618 - 37123818
Alignment:
Q  35 ggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttgtcattggggtgttttt 126  Q
    |||||| ||||||||||||||||||||||||| ||||||||||  ||||||||||  |||        ||||||||||||||||||          ||      
T  37123618 ggtggtgttggatatcgtttttacagtggtcgttttcgtgaagaagtctattttatatggtgatgtgtattttggtgggtgttgtc----------ttca 37123707  T
Q  127 agggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtt 221  Q
    ||||||||||||||||||||||||| |||| || | ||||     |||||||||||| ||||| |||||||  |||||||||| || |||| |  |||||    
T  37123708 agggtgtttattttcgggtgttccgactatgtaggacgccttttgtttgtattctcagtttcatcggtctcagttcgtcttgagcagagatttaattgtt 37123807  T
Q  222 taataatattt 232  Q
    |||||| ||||    
T  37123808 taataaaattt 37123818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 25594406 - 25594336
Alignment:
Q  20 tgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggt 92  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||| || | ||||||||    
T  25594406 tgagtagtggcgatgggtggt-ttggatatcgttttttcagtggtcg-ttttgtgaaggagtatgttttaggt 25594336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 14194260 - 14194310
Alignment:
Q  119 gtgtttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    ||||||||||| ||||||||||||| ||||||||||||||| ||| |||||    
T  14194260 gtgtttttaggatgtttattttcggatgttccgcctatataaggcaccttt 14194310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 25594256 - 25594217
Alignment:
Q  122 tttttagggtgtttattttcgggtgttccgcctatatacg 161  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  25594256 tttttatggtgtttactttcgggtgttccgcctatatacg 25594217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 823080 - 823027
Alignment:
Q  182 tcaccggtctctcttcgtcttgaacaaagatctggttgtttaataatatttgct 235  Q
    |||||||||||| |||||||||| ||  ||||||||| |||||||| |||||||    
T  823080 tcaccggtctctgttcgtcttgagcagcgatctggttttttaataaaatttgct 823027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 1652617 - 1652577
Alignment:
Q  128 gggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  1652617 gggtgtttattt-cgggtgttccgcctatatacgacgccttt 1652577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 25992233 - 25992457
Alignment:
Q  21 gagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtggattttggtgggtgttgtcattggggt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25992233 gagtagtggcgatgggtggtattggatatcgtttttacagtggttgctttcgtgaaggggtctgttttaggtggattttggtgggtgttgtcattggggt 25992332  T
Q  121 gtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctg 215  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||     |||||||| ||| |||||||||||||| |||||||||| || |||||||    
T  25992333 gtttttagggtgtttattgtcgggtgttccgcatatatacggcgccttttgtttgtattatcattttcaccggtctctgttcgtcttgagcagagatctg 25992432  T
Q  216 gttgtttaataatatttgctgattc 240  Q
    |||||||||||||||||||||||||    
T  25992433 gttgtttaataatatttgctgattc 25992457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 33258740 - 33258515
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtggattttggtgggtgttgtcattggg 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| ||||||||||| |||||    
T  33258740 gtgagtagtggcgatggatggtattggatatcgtttttacagtggtcgctttcgtgaagagatctgttttaggtggattttgatgggtgttgtctttggg 33258641  T
Q  119 gtgtttttagggtgtttattttcgggtgttccgcctatatacggcgccttt-----gtattctcaatttcaccggtctctcttcgtcttgaacaaagatc 213  Q
     |||||||| |||||||||||||||||||| | | ||||||||||||||||     |||||  ||||||||||||||||| ||||| ||||  |   ||     
T  33258640 atgtttttatggtgtttattttcgggtgtttcacatatatacggcgccttttatttgtatttccaatttcaccggtctctgttcgttttgagtagcaatt 33258541  T
Q  214 tggttgtttaataatatttgctgatt 239  Q
    | | ||||||||||||||||||||||    
T  33258540 tagctgtttaataatatttgctgatt 33258515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 26405324 - 26405180
Alignment:
Q  95 attttggtgggtgttgtcatt-ggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccgg 188  Q
    |||||||||| ||||||| |  |||||||||||| ||||||||||||||||||||||| ||||||||| ||||     |||||||||||| |||||||||    
T  26405324 attttggtggttgttgtcctcaggggtgtttttaaggtgtttattttcgggtgttccgactatatacgacgccttttgtttgtattctcagtttcaccgg 26405225  T
Q  189 tctctcttcgtcttgaacaaagatctggttgtttaataatatttg 233  Q
    ||| | |||||||||| || | ||||||||||||||||| |||||    
T  26405224 tctttgttcgtcttgagcagaaatctggttgtttaataaaatttg 26405180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 33110047 - 33109831
Alignment:
Q  30 cgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttag--------gtggattttggtgggtgttgtcattggggtg 121  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||        ||| ||||||||||||||||||| | |||||    
T  33110047 cgatgggtggtattggatatcgtttttacagtggtcgttttcgtgaaggggtttgttttaggtgatgacgtgtattttggtgggtgttgtca-tagggtg 33109949  T
Q  122 tttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctgg 216  Q
    ||||||  ||||||||||||||||||| || |  ||||| ||| |     |||||||||||| |||||||  | | | |||||||| | || |||| ||     
T  33109948 tttttaaagtgtttattttcgggtgtttcggc--tatacagcgtcttttgtttgtattctcagtttcaccaatttatgttcgtcttaagcagagatttga 33109851  T
Q  217 ttgtttaataatatttgctg 236  Q
    ||||||||||||||||||||    
T  33109850 ttgtttaataatatttgctg 33109831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 26045824 - 26045596
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttg 110  Q
    |||||||||| ||||||| ||| |||||| |||||||||| ||||||  |||| |||||  |||| ||||||||||        ||||||||||||||||    
T  26045824 gtgagtagtgacgatgggaggtgttggatttcgtttttaccgtggtcattttcatgaagaagtctgttttaggtggtgacgtgaattttggtgggtgttg 26045725  T
Q  111 tcat-tggggtg-tttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttg 203  Q
    || |  |||| | ||||||||||||||||||| || ||||||| ||||||||||||||     ||||||| ||||| ||||||||||||| ||||| |||    
T  26045724 tcctcaggggcgttttttagggtgtttatttttggatgttccgtctatatacggcgccttttgtttgtatgctcaacttcaccggtctctgttcgttttg 26045625  T
Q  204 aacaaagatctggttgtttaataatattt 232  Q
    | ||  ||||| |||||||||||| ||||    
T  26045624 agcattgatctagttgtttaataaaattt 26045596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 8297693 - 8297922
Alignment:
Q  18 agtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgtt 109  Q
    ||||||||||| |||| ||||||  |||| |||||||||||| |||||  |||| |||||| || | ||||||||||        |||||||||| ||||    
T  8297693 agtgagtagtgacgataggtggt--tggaaatcgtttttacattggtctttttcttgaaggagtgtgttttaggtggtgatgtgtattttggtggatgtt 8297790  T
Q  110 gtcatt-ggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgccttt----gtattctcaatttcaccggtctctcttcgtcttga 204  Q
     || |  |||||||||||||||||| ||||||| |||||||||||||| |||  |||||||    ||||||||| |||||||||||||| ||||||||||    
T  8297791 atcctcaggggtgtttttagggtgtgtattttcaggtgttccgcctatgtacaacgcctttttttgtattctcagtttcaccggtctctgttcgtcttga 8297890  T
Q  205 acaaagatctggttgtttaataatatttgctg 236  Q
      | ||||||| ||||| ||||| ||||||||    
T  8297891 gtagagatctgattgttcaataaaatttgctg 8297922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 14302303 - 14302150
Alignment:
Q  20 tgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttgt 111  Q
    ||||||||| |||  |||||| |||||||||||||||||| |||||| ||||| |||||  ||| ||||||||||        |||||||||||||||||    
T  14302303 tgagtagtgacgacaggtggtgttggatatcgtttttacattggtcgttttcgcgaaggaatctgttttaggtggtgacgtgtattttggtgggtgttgt 14302204  T
Q  112 catt-ggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcg 164  Q
    |||  |||||||||||||| | |||||||| |||||||||  ||||||||||||    
T  14302203 catcaggggtgtttttaggatttttatttttgggtgttccttctatatacggcg 14302150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 30097637 - 30097713
Alignment:
Q  95 attttggtgggtgttgtcat--tggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    ||||||||||||||||||||  |||    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30097637 attttggtgggtgttgtcatcatggatgttttttagggtgtttattttcgggtgttccgcctatatacggcgtcttt 30097713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 7391752 - 7391623
Alignment:
Q  117 gggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgc-------ctttgtattctcaatttcaccggtctctcttcgtcttgaacaaa 209  Q
    ||||||||||||| ||| || |||| ||| |||||||||||||| || |       ||||||||||||| |||||||||||||| ||||||||||||| |    
T  7391752 gggtgtttttaggttgtgtactttcaggttttccgcctatatacagcacatttacactttgtattctcattttcaccggtctctgttcgtcttgaacaga 7391653  T
Q  210 gatctggttgtttaataatatttgctgatt 239  Q
    |||||| |  |||||||| ||||| |||||    
T  7391652 gatctgatgatttaataaaatttgttgatt 7391623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 13953996 - 13953876
Alignment:
Q  122 tttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaattt--caccggtctctcttcgtcttgaacaaagatct 214  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||     |||||| ||||| |||  ||||||||||| |||||||||| || ||| ||    
T  13953996 tttttaaggtgtttattttcaggtgttccgcctatatacggcgcctttagtttgtactctcagtttcacaccggtctctgttcgtcttgagcagagacct 13953897  T
Q  215 ggttgtttaataatatttgct 235  Q
    ||  ||| ||||| |||||||    
T  13953896 ggaggttaaataaaatttgct 13953876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 233
Target Start/End: Original strand, 10174924 - 10175128
Alignment:
Q  42 ttggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtggat--------tttggtgggtgttgtcattgg-ggtgtttttagggtg 132  Q
    ||||||||||||||||| ||||||| |||   ||||| |||| |||||||||| |        |||||||||||||||| | || |||||||||||| ||    
T  10174924 ttggatatcgtttttaccgtggtcgttttttagaaggagtctgttttaggtggttacgtgtactttggtgggtgttgtcctcggaggtgtttttaggatg 10175023  T
Q  133 tttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataa 227  Q
    |||| |||| ||||||  |||||||||||  |||     |||||||||| |||||||||||||||| ||| | ||||  || |||||||||| |||||||    
T  10175024 ttta-tttcaggtgttttgcctatatacgatgccttttgtttgtattcttaatttcaccggtctctgttcattttgagtaaggatctggttgattaataa 10175122  T
Q  228 tatttg 233  Q
     |||||    
T  10175123 aatttg 10175128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 31742504 - 31742544
Alignment:
Q  129 ggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  31742504 ggtgtttgttttcgggtgttccgcctatatacggcgccttt 31742544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 24072000 - 24071965
Alignment:
Q  131 tgtttattttcgggtgttccgcctatatacggcgcc 166  Q
    ||||||||||||||||||||||||||||||||||||    
T  24072000 tgtttattttcgggtgttccgcctatatacggcgcc 24071965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 27713421 - 27713515
Alignment:
Q  137 ttttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataa 227  Q
    ||||||||||||||||||||||| ||||||     ||||||| |||| |||||| ||||||  |||||||||||||  ||||||||| ||||||||    
T  27713421 ttttcgggtgttccgcctatatatggcgcctttcgtttgtatcctcagtttcactggtctcagttcgtcttgaacagggatctggtt-tttaataa 27713515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 5187276 - 5187385
Alignment:
Q  123 ttttagggtgtttattttcgggtgttccgcctatatacggcgccttt-----gtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggt 217  Q
    ||||| |||||||||||||||||| | |  |||||| ||||||||||     |||||||||||||||||| |||||  || |||||| || |||| | ||    
T  5187276 ttttatggtgtttattttcgggtgcttcatctatatgcggcgccttttgtttgtattctcaatttcaccgatctctgctcttcttgagcagagatttagt 5187375  T
Q  218 tgtttaataa 227  Q
    ||||||||||    
T  5187376 tgtttaataa 5187385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 6159827 - 6159874
Alignment:
Q  129 ggtgtttattttcgggtgttccgcctatatacggcgcctttgtattctc 177  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  6159827 ggtgtttatttt-gggtgttccgcctatatacagcgcctttgtagtctc 6159874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 7682886 - 7682973
Alignment:
Q  122 tttttagggtgtttattttcgggtgttccgcctatatacggcgccttt-----gtattctcaatttcaccggtctctcttcgtcttga 204  Q
    ||||| ||||| |||||||||| ||||||||||||||||| |||||||     ||||||||| ||||||| ||||   ||||||||||    
T  7682886 ttttttgggtgcttattttcggatgttccgcctatatacgacgcctttaatttgtattctcagtttcacccgtctacattcgtcttga 7682973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 37108127 - 37108170
Alignment:
Q  117 gggtgtttttagggtgtttattttcgggtgttccgcctatatac 160  Q
    ||||||||||||||||||||||||  | ||||||||||||||||    
T  37108127 gggtgtttttagggtgtttattttttgatgttccgcctatatac 37108170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 23426646 - 23426680
Alignment:
Q  135 tattttcgggtgttccgcctatatacggcgccttt 169  Q
    ||||||||||||||||||||||||||||| |||||    
T  23426646 tattttcgggtgttccgcctatatacggcaccttt 23426680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 31722012 - 31722050
Alignment:
Q  130 gtgtttattttcgggtgttccgcctatatacggcgcctt 168  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  31722012 gtgtttgttttcgggtgttccgtctatatacggcgcctt 31722050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 31742384 - 31742428
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggt 64  Q
    |||||||||||||||||||| || |||||||||||||| |||||||    
T  31742384 gtgagtagtggcgatgggtgtta-tggatatcgttttttcagtggt 31742428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 8731278 - 8731318
Alignment:
Q  129 ggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    |||||||||||| ||||||| || |||||||||||||||||    
T  8731278 ggtgtttatttttgggtgtttcgtctatatacggcgccttt 8731318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 27102413 - 27102634
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtggattttggtgggtgttgtcattggg 118  Q
    |||||||||| ||||| ||||| |||||| |||||||||||||||  | ||||||||| |  ||| ||||||| |||||||||||||||||||| |   |    
T  27102413 gtgagtagtgacgatgagtggtgttggatttcgtttttacagtggctgttttcgtgaaagtatctgttttagg-ggattttggtgggtgttgtcctcatg 27102511  T
Q  119 gtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||     ||||||||||||  |||||| |||| | ||||||||||||| |||||    
T  27102512 gtgtttttagggtgtttattttcgggtgttccgcctatatacggcaccttttgtttgtattctcaggttcaccagtctttgttcgtcttgaacagagatc 27102611  T
Q  214 tggttgtttaataatatttgctg 236  Q
    |||||||||||||| ||||||||    
T  27102612 tggttgtttaataaaatttgctg 27102634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 11439877 - 11439652
Alignment:
Q  21 gagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttgtc 112  Q
    |||||||| ||||  ||||| ||||||||| ||||||| ||||| |||||||||||||| ||| ||||||||||        |||||||||| |||||||    
T  11439877 gagtagtgacgataagtggtgttggatatcatttttacggtggttgctttcgtgaagggatctgttttaggtggtgacgtgtattttggtggatgttgtc 11439778  T
Q  113 attggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaaca 207  Q
     |  ||| | ||||||||||||||||||||| ||||||| ||||||| | ||||     |||||||||||| |||||||| ||| | |||||||||| ||    
T  11439777 ttcagggggattttagggtgtttattttcggatgttccgtctatatatgtcgccttttgtttgtattctcattttcaccgatctttgttcgtcttgagca 11439678  T
Q  208 aagatctggttgtttaataatatttg 233  Q
     ||||||||||||||||||| |||||    
T  11439677 gagatctggttgtttaataaaatttg 11439652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 32882587 - 32882747
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttg 110  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||| ||| ||||||||||| |||  ||||||| ||        ||||||||||||||||    
T  32882587 gtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcagttttaggcggtgatgtatattttggtgggtgttg 32882686  T
Q  111 tcattgggg-tgt-ttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    || | |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  32882687 tcctcgggggtgtcttttagggtgtttattttcgggtgttctgcctatatacggcgccttt 32882747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 9313094 - 9312972
Alignment:
Q  116 ggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgccttt-----gtattctcaatttcaccggtctctcttcgtcttgaacaaag 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||     ||||| | | |||||||||||||| |||||||||| || ||    
T  9313094 ggggtgtttttagggtgtttattttcgggtgttccgcctatatacgacgccttttgattgtattataagtttcaccggtctctgttcgtcttgagcagag 9312995  T
Q  211 atctggttgtttaataatatttg 233  Q
    |||| |||||||||||| |||||    
T  9312994 atctcgttgtttaataaaatttg 9312972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 234
Target Start/End: Original strand, 46768437 - 46768627
Alignment:
Q  60 gtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttgtcattgggg-tgtttt-tagggtgtttattttcgggtgttc 149  Q
    ||||||| ||||||||||| |||| ||||||||||        |||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||    
T  46768437 gtggtcgttttcgtgaaggagtctgttttaggtggtgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 46768536  T
Q  150 cgcctatatac-ggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataatatttgc 234  Q
    |||||| |||| ||||||     ||||||| ||||||||||||  ||||| |||||||||| |||  || |||||||||||||| ||||||    
T  46768537 cgcctacatacgggcgccttttgtttgtatgctcaatttcaccaatctctgttcgtcttgagcaagaatttggttgtttaataaaatttgc 46768627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 34775092 - 34775252
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttg 110  Q
    |||||||||| ||| |||| || | |||| ||||||||||||| |||| ||||||||||| |||| |||||||||         ||||||||||||||||    
T  34775092 gtgagtagtgacgacgggtagtgtgggatttcgtttttacagttgtcgttttcgtgaaggagtctgttttaggtgatgacgtgtattttggtgggtgttg 34775191  T
Q  111 tc---attggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    ||   |||||  | |||||| |||||||||||||||||||||||||||||||||||||||||    
T  34775192 tcctcattggtat-tttttaaggtgtttattttcgggtgttccgcctatatacggcgccttt 34775252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 4431003 - 4431127
Alignment:
Q  117 gggtgtttttagggtgtttattttcgggtgttcc-gcctatatacggcgccttt-----gtattctcaatttcaccggtctctcttcgtcttgaacaaag 210  Q
    |||||||||||||||||| |||||  |||||||| |||| ||||||||||||||     |||||||||||||||||||||||| |||||||||| || ||    
T  4431003 gggtgtttttagggtgtt-atttttaggtgttcccgcctttatacggcgccttttgtttgtattctcaatttcaccggtctctattcgtcttgagcagag 4431101  T
Q  211 atctggttgtttaataatatttgctg 236  Q
    || || ||||||||||| ||||||||    
T  4431102 atatgtttgtttaataaaatttgctg 4431127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 7451959 - 7451890
Alignment:
Q  167 tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataatatttgctg 236  Q
    |||||||||||| |||||||||||||| |||||||||| || |||||| |||||||||||||||||||||    
T  7451959 tttgtattctcagtttcaccggtctctgttcgtcttgagcagagatctagttgtttaataatatttgctg 7451890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 52278589 - 52278717
Alignment:
Q  96 ttttggtgggtgttgtcattggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcct----ttgtattctcaatttcaccggtct 191  Q
    ||||||||||||||||| | | ||||| |||| ||||||||||||| ||||||||||||||||| |||||||    ||||||||||  ||||| | ||||    
T  52278589 ttttggtgggtgttgtcctcgtggtgtctttaaggtgtttattttcaggtgttccgcctatatatggcgccttagcttgtattctctgtttca-cagtct 52278687  T
Q  192 ctcttcgtcttgaacaaagatctggttgtt 221  Q
    || |||||||||| ||  ||||||||||||    
T  52278688 ctgttcgtcttgagcagggatctggttgtt 52278717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 31290775 - 31290653
Alignment:
Q  116 ggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcct-----ttgtattctcaatttcaccggtctctcttcgtcttgaacaaag 210  Q
    |||||||||||| ||||||||||||||||||||||| ||| |||  | ||||     ||||||||||| | ||||| |||||| ||||| ||||  ||||    
T  31290775 ggggtgtttttatggtgtttattttcgggtgttccgtctacatatagtgcctcttgtttgtattctcagtctcaccagtctctgttcgttttgagtaaag 31290676  T
Q  211 atctggttgtttaataatatttg 233  Q
    |||||||||||||||| ||||||    
T  31290675 atctggttgtttaatagtatttg 31290653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 16149110 - 16149155
Alignment:
Q  123 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctt 168  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  16149110 ttttagggtgtttattttcgcgtgttccgcctatatacggcgcctt 16149155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 376549 - 376507
Alignment:
Q  127 agggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  376549 agggtgtttattttcaggtgttctgcctatatacggcgccttt 376507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 2987863 - 2987824
Alignment:
Q  129 ggtgtttattttcgggtgttccgcctatatacggcgcctt 168  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  2987863 ggtgtttgttttcggatgttccgcctatatacggcgcctt 2987824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 9313155 - 9313104
Alignment:
Q  30 cgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggt 81  Q
    ||||| |||||||||||||||||||| ||| |||| ||||| ||||||||||    
T  9313155 cgatgagtggtattggatatcgttttaacaatggttgcttttgtgaaggggt 9313104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 9557290 - 9557357
Alignment:
Q  167 tttgtattctcaatttcaccggtctctctt-cgtcttgaacaaagatctggttgtttaataatatttg 233  Q
    ||||||||||||  ||||||||||||| || |||||||| || |||||||||||||||| || |||||    
T  9557290 tttgtattctcagattcaccggtctctgtttcgtcttgagcagagatctggttgtttaacaaaatttg 9557357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 16148996 - 16149070
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg 94  Q
    |||||||||| ||||||||| | ||||||||||||||| |||| |||| || | |||||| |||| ||||||||||    
T  16148996 gtgagtagtgacgatgggtgcttttggatatcgttttt-cagtagtcgtttacatgaaggtgtctgttttaggtgg 16149070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 42374526 - 42374561
Alignment:
Q  131 tgtttattttcgggtgttccgcctatatacggcgcc 166  Q
    ||||||||||||||||||||||||||||| ||||||    
T  42374526 tgtttattttcgggtgttccgcctatatatggcgcc 42374561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 10785319 - 10785252
Alignment:
Q  20 tgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctatttta 89  Q
    ||||||||| |||||||||||  |||||||||||||| |||  |||| ||||||||||| |||| |||||    
T  10785319 tgagtagtgacgatgggtggt--tggatatcgttttttcagatgtcgttttcgtgaaggagtctgtttta 10785252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 19598990 - 19599036
Alignment:
Q  129 ggtgttta-ttttcgggtgttccgcctatatacggcgcctttgtatt 174  Q
    |||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  19598990 ggtgtttacttttcaggtgttccgcctatatacggcgcctttttatt 19599036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 10605082 - 10605151
Alignment:
Q  171 tattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataatatttgctgattc 240  Q
    |||||||  ||||||| |||||| |||||||||| ||  |||||| ||||| ||||| ||||||||||||    
T  10605082 tattctctgtttcaccagtctctattcgtcttgagcagggatctgattgttaaataaaatttgctgattc 10605151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 32863320 - 32863255
Alignment:
Q  98 ttggtgggtgttgtcat-tggggtgtttttag-ggtgtttattttcgggtgttccgcctatatacg 161  Q
    ||||||||||||||| | | ||||||||||   ||||||||||||| |||||||||||||||||||    
T  32863320 ttggtgggtgttgtcctcttgggtgtttttcttggtgtttattttcaggtgttccgcctatatacg 32863255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 50589014 - 50588973
Alignment:
Q  129 ggtgtttatt-ttcgggtgttccgcctatatacggcgccttt 169  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  50589014 ggtgtttattcttcaggtgttccgcctatatacggcgccttt 50588973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 31290878 - 31290805
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg 94  Q
    |||||||||| |||||| ||||  ||| |||| ||||||||||||||| ||||| ||||| ||||  |||||||||    
T  31290878 gtgagtagtgacgatggatggt--tggctatcatttttacagtggtcgttttcgcgaaggagtctgatttaggtgg 31290805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 41126350 - 41126275
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtgg-tcgctttcgtgaaggggtctattttaggtgg 94  Q
    |||||||||| |||||||||||  ||||||||| ||||||||||| | | ||||||||| | |||| ||||||||||    
T  41126350 gtgagtagtgacgatgggtggtgatggatatcg-ttttacagtggtttgttttcgtgaatgcgtctgttttaggtgg 41126275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 1321015 - 1321241
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaa-ggggtctattttaggtgg--------attttggtgggtgtt 109  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||||        |||||||||| || |    
T  1321015 gtgagtagtgacgatgagtggtattagatatcgtttttacagtggttgctttcgtgaaaggggtctgttttaggtggtgatgtgtattttggtggatggt 1321114  T
Q  110 gtcattggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc---tttgtattctcaatttcaccggtctctcttcgtcttgaac 206  Q
    ||| |   || |||||||||||||||||||||||| ||||||||||||||||||| |   |||||||||||| ||||| || ||||  ||||||||||      
T  1321115 gtcttcaaggggtttttagggtgtttattttcgggagttccgcctatatacggcgtcgtgtttgtattctcagtttcatcgatctccgttcgtcttgagt 1321214  T
Q  207 aaagatctggttgtttaataatatttg 233  Q
    | |||| |||||||||||||| |||||    
T  1321215 agagatgtggttgtttaataaaatttg 1321241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 42533117 - 42532884
Alignment:
Q  21 gagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtg--ga------ttttggtgggtgttgtc 112  Q
    |||||||| |||||||||||||||||| || |||||||| |||| |||||||||||  ||| | |||||||||  ||      |||| ||||||||||||    
T  42533117 gagtagtgacgatgggtggtattggatttcatttttacaatggttgctttcgtgaataggtatgttttaggtgatgacgtatttttttgtgggtgttgtc 42533018  T
Q  113 attg-gggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcct-----ttgtattctcaatttcaccggtctctcttcgtcttgaac 206  Q
    ||   ||| ||||||||||||||||||| | |||||||||||||||||||||||||     ||||||||||| || ||||||||||| |||||||||| |    
T  42533017 atcaagggagtttttagggtgtttatttccaggtgttccgcctatatacggcgccttttggttgtattctcagttccaccggtctctgttcgtcttgagc 42532918  T
Q  207 aaagatctggttgtttaataatatttgctgattc 240  Q
    |  ||| ||||||| |||||| |||| |||||||    
T  42532917 agggatttggttgtctaataaaatttactgattc 42532884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 28534240 - 28534130
Alignment:
Q  134 ttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataat 228  Q
    |||||||||||||||||||||||||||||||||     ||||||||||| |  |||||||||||| |||||||||| ||||||| ||||| ||||||||     
T  28534240 ttattttcgggtgttccgcctatatacggcgccttttatttgtattctctaaatcaccggtctctgttcgtcttgagcaaagatttggtt-tttaataaa 28534142  T
Q  229 atttgctgattc 240  Q
    ||||||||||||    
T  28534141 atttgctgattc 28534130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 3478683 - 3478804
Alignment:
Q  123 ttttagggtgtttattttcgggtgttccgcctatatacggcgcct------ttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctgg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||      ||| | ||||  |||||||||||||| || ||||||| ||  |||||||    
T  3478683 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttcaggttgcactctc--tttcaccggtctctgtttgtcttgatcagggatctgg 3478780  T
Q  217 ttgtttaataatatttgctgattc 240  Q
    ||||| ||||| ||||||||||||    
T  3478781 ttgttaaataaaatttgctgattc 3478804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 36674726 - 36674816
Alignment:
Q  33 tgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtggattttggtgggtgttgtcattggggtgttt 124  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||  |||| ||||||||||||||||||||  |||| | |||||||||||    
T  36674726 tgggtggtattggatatcgtttttatagtggtcgctttc-tgaagtagtctcttttaggtggattttggtggacgttgactttggggtgttt 36674816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 16954816 - 16954937
Alignment:
Q  116 ggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaag 210  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||| |||     |||||| ||||| |||||||||||| | || |||||||||| ||    
T  16954816 ggggtgtttttagcgtgtttattttcggatgttccgcctatatacggtgccttttatttgta-tctcagtttcaccggtctttgtttgtcttgaacagag 16954914  T
Q  211 atctggttgtttaataatatttg 233  Q
    ||  || ||||||||||||||||    
T  16954915 atgaggatgtttaataatatttg 16954937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 16828854 - 16828733
Alignment:
Q  116 ggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgc-----ctttgtattctcaatttcaccggtctctcttcgtcttgaacaaag 210  Q
    ||||| ||| |||| |||||||||||||||||||||||||||||||||||      |||||||||||| |||||||||||| | || |||||||||| ||    
T  16828854 ggggtatttctaggatgtttattttcgggtgttccgcctatatacggcgcattttgtttgtattctcagtttcaccggtctttgtttgtcttgaacagag 16828755  T
Q  211 atctggttgtttaataatattt 232  Q
    ||| |  ||||||||| |||||    
T  16828754 atcagcatgtttaatattattt 16828733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 33719271 - 33719413
Alignment:
Q  95 attttggtgggtgttgtcattggg-gtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccgg 188  Q
    |||||||||||||||||| |   | |||||||||||||||||| |||||  |||||||||||||| | |||||     |||||||||||| ||||||||     
T  33719271 attttggtgggtgttgtcctcatgagtgtttttagggtgtttactttcga-tgttccgcctatattcagcgccgtttgtttgtattctcagtttcaccga 33719369  T
Q  189 tctctcttcgtcttgaacaaagatctggttgtttaataatattt 232  Q
    ||||| |||||||||| ||  |||||||||||||||||| ||||    
T  33719370 tctctgttcgtcttgagcagggatctggttgtttaataaaattt 33719413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 6726147 - 6726051
Alignment:
Q  142 gggtgttccgcctatatacggcgccttt-----gtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataatatttg 233  Q
    |||||||||||||||||||||||  |||     ||||||||| |||||||| ||||| |||||||||| || ||||||||||||||||||| |||||    
T  6726147 gggtgttccgcctatatacggcgttttttgtttgtattctcagtttcaccgatctctgttcgtcttgagcagagatctggttgtttaataaaatttg 6726051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 8745469 - 8745578
Alignment:
Q  128 gggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgttt 222  Q
    |||||||| |||||||||||||||||||||||||||| |     ||| |||| ||| ||||||| |||||| ||||||||||| |  ||| || ||||||    
T  8745469 gggtgttt-ttttcgggtgttccgcctatatacggcgtctcttgtttctattttcagtttcaccagtctctgttcgtcttgaatagggatttgattgttt 8745567  T
Q  223 aataatatttg 233  Q
    |||||||||||    
T  8745568 aataatatttg 8745578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 47456800 - 47456699
Alignment:
Q  143 ggtgttccgcctatatacggcgccttt-----gtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataatatttgctga 237  Q
    |||||||||||||||||| ||||||||     ||||| ||  |||||||||||||| |||||||||| || |||||||||| |||||||| ||||| |||    
T  47456800 ggtgttccgcctatatactgcgcctttcatttgtattttctgtttcaccggtctctgttcgtcttgagcagagatctggtt-tttaataaaatttgttga 47456702  T
Q  238 ttc 240  Q
    |||    
T  47456701 ttc 47456699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 36674809 - 36674926
Alignment:
Q  128 gggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgttt 222  Q
    |||||||||||||||| | ||||||||||||||| ||||     |||||||   ||||||||||| ||||| ||||||||||      |||| |||||||    
T  36674809 gggtgtttattttcggatattccgcctatatacgacgccttttgtttgtatctccaatttcaccgatctctgttcgtcttgagtcggaatctagttgttt 36674908  T
Q  223 aataatatttgctgattc 240  Q
    ||||||||||||| ||||    
T  36674909 aataatatttgctaattc 36674926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 48058405 - 48058306
Alignment:
Q  137 ttttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataatatt 231  Q
    |||| |||||||||||||||||| | ||||     ||||||||||| ||||||||||||||| || ||||||| || |||| ||||| |||||||| |||    
T  48058405 ttttagggtgttccgcctatatatgacgcctttcgtttgtattctctatttcaccggtctctgtttgtcttgagcagagatatggtt-tttaataaaatt 48058307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 6716484 - 6716437
Alignment:
Q  122 tttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    |||||||||||||||||||| |||||||||  |||||||||| |||||    
T  6716484 tttttagggtgtttattttcaggtgttccggttatatacggccccttt 6716437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 6716597 - 6716538
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaagg 78  Q
    |||||||||| | ||||||||| |  |||| ||||||||||||||||| |||||||||||    
T  6716597 gtgagtagtgacaatgggtggtgtgagataccgtttttacagtggtcgttttcgtgaagg 6716538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 26385904 - 26385858
Alignment:
Q  122 tttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    |||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  26385904 tttttatggtgtttatttt-gggtgttccgcctatatacggcgtcttt 26385858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 25438690 - 25438731
Alignment:
Q  122 tttttagggtgttta-ttttcgggtgttccgcctatatacgg 162  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  25438690 tttttatggtgtttacttttcgggtgttccgcctatatacgg 25438731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 13312180 - 13312208
Alignment:
Q  132 gtttattttcgggtgttccgcctatatac 160  Q
    |||||||||||||||||||||||||||||    
T  13312180 gtttattttcgggtgttccgcctatatac 13312208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 41086648 - 41086436
Alignment:
Q  21 gagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtggattttggtgggtgttgtcat-tgggg 119  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||    ||    |||||||| |  ||||    
T  41086648 gagtagtgacgatgggtggtattggatatcgtttttagagtggtcgctttcgttaaggggtctgttttaggtgg----tg--acgtgttgtcttcagggg 41086555  T
Q  120 tgtttttagggtgtttattttcgggtgttccgcctatatacggcgc-----ctttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatct 214  Q
    |||||||||||| |||||||||||||||| ||||||||||||  ||     |||||||| |||| |||||| ||||||| |||||||||| || ||||||    
T  41086554 tgtttttagggtatttattttcgggtgtttcgcctatatacgatgctttttctttgtatgctcagtttcactggtctctgttcgtcttgagcagagatct 41086455  T
Q  215 ggttgtttaataatatttg 233  Q
     ||||||||| || |||||    
T  41086454 agttgtttaacaaaatttg 41086436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 7696183 - 7696413
Alignment:
Q  18 agtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgtt 109  Q
    ||||||||||| ||||| |||||  || ||||| |||||||| |||||| ||||||||||| || ||||||||||||        |||||||||||||||    
T  7696183 agtgagtagtgacgatgagtggt--tgaatatcatttttacattggtcgttttcgtgaaggagtttattttaggtggtgatgtgtattttggtgggtgtt 7696280  T
Q  110 gtcattgggg-tgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttg 203  Q
    ||| | |||| |||||||| |||||||||||| |||||||||||||||||||||  ||     |||||||||||||||||| |||||||| ||| |||||    
T  7696281 gtcctcgggggtgtttttaaggtgtttatttttgggtgttccgcctatatacggttccttttgtttgtattctcaatttcatcggtctctgttcatcttg 7696380  T
Q  204 aacaaagatctggttgtttaataatatttgctg 236  Q
    | ||  ||| |||||||| ||||| ||||||||    
T  7696381 agcagggatttggttgttcaataaaatttgctg 7696413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 91 - 233
Target Start/End: Complemental strand, 37770429 - 37770285
Alignment:
Q  91 gtggattttggtgggtgttgtcattggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgc--ctttgtattctcaatttcaccgg 188  Q
    ||||||||||||||||| | || |   |||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||  |||||||     
T  37770429 gtggattttggtgggtggtatcctcatggtgtttttagggtgtttattttcgggtgttccgcctatatacgacgcttgtttgtattctcatattcaccga 37770330  T
Q  189 tctctcttcgtcttgaacaaagatctggttgtttaataatatttg 233  Q
    ||||| || ||||||| ||  ||||| | |||| ||||| |||||    
T  37770329 tctctgtttgtcttgatcatggatctagctgttcaataaaatttg 37770285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 13337577 - 13337670
Alignment:
Q  116 ggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttga 204  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| ||||     |||||||||||  |||||||||||||| ||||||||||    
T  13337577 ggggtgtttttagggtgtttattttcaggtgttccacctatatacgacgccttttgtttgtattctctgtttcaccggtctctgttcgtcttga 13337670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 34230423 - 34230648
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctatttt-------aggtggattttggtgggtgttgt 111  Q
    ||||||||| |||| ||||| | |||||||||||||||| |||||||| ||||||| | | |||| |||        | ||| |||||||||| ||||||    
T  34230423 gtgagtagttgcgacgggtgttgttggatatcgtttttatagtggtcgttttcgtggaagagtctgtttagatggtgacgtgtattttggtggatgttgt 34230522  T
Q  112 catt-ggggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaa 205  Q
      |  |||||||||||| | ||||||||||  |||||||||||||||||||||| |     ||||||||| | | ||||||| ||||| ||||||||||     
T  34230523 tctaaggggtgtttttacgatgtttattttttggtgttccgcctatatacggcgtcttttgtttgtattcgc-agttcaccgatctctgttcgtcttgag 34230621  T
Q  206 caaagatctggttgtttaataatattt 232  Q
    || |||| |||||||||||||||||||    
T  34230622 cagagatatggttgtttaataatattt 34230648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 233
Target Start/End: Original strand, 4974990 - 4975194
Alignment:
Q  44 ggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttgtcattgggg-tgttttt-agggtgt 133  Q
    ||||||||||||||||||||||| ||||||||||  |||| ||||||||||        | ||||||||||||| || |   || ||||||| |||||||    
T  4974990 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgttatcctcaaggatgtttttcagggtgt 4975089  T
Q  134 ttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataat 228  Q
    |||||||||||||||| ||||||||||| ||||     |||||||||| | ||||||  |||||| |||||||||| || ||| ||| | ||| |||||     
T  4975090 ttattttcgggtgttcagcctatatacgacgcctttagtttgtattcttagtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaa 4975189  T
Q  229 atttg 233  Q
    |||||    
T  4975190 atttg 4975194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 233
Target Start/End: Original strand, 4992898 - 4993102
Alignment:
Q  44 ggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttgtcattgggg-tgttttt-agggtgt 133  Q
    ||||||||||||||||||||||| ||||||||||  |||| ||||||||||        | ||||||||||||| || |   || ||||||| |||||||    
T  4992898 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgttatcctcaaggatgtttttcagggtgt 4992997  T
Q  134 ttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataat 228  Q
    |||||||||||||||| ||||||||||| ||||     |||||||||| | ||||||  |||||| |||||||||| || ||| ||| | ||| |||||     
T  4992998 ttattttcgggtgttcagcctatatacgacgcctttagtttgtattcttagtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaa 4993097  T
Q  229 atttg 233  Q
    |||||    
T  4993098 atttg 4993102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 12343040 - 12343113
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg 94  Q
    |||||||||| ||||| |||||  |||||||||||||||||| ||||| ||||||||||| |||| ||||||||||    
T  12343040 gtgagtagtgacgatgagtggt--tggatatcgtttttacagaggtcgttttcgtgaaggagtctgttttaggtgg 12343113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 207
Target Start/End: Complemental strand, 41113573 - 41113398
Alignment:
Q  44 ggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttgtcattggggtgtttttagggtgttt 135  Q
    ||||||||||| |||| | |||| ||||||||||| |||| |||||||| |        |||||||||||||   |||| || || |||||||||| |||    
T  41113573 ggatatcgtttgtacaatagtcgttttcgtgaaggagtctgttttaggtagtaacgtttattttggtgggtgccctcatgggtgt-tttttagggtattt 41113475  T
Q  136 attttcgggtgttccgcctatatacggcgccttt-----gtattctcaatttcaccggtctctcttcgtcttgaaca 207  Q
    |||||||| ||||||||||||||||   | ||||     ||||||||| |||||||||||||| |||||||||||||    
T  41113474 attttcggatgttccgcctatatacaatgtctttagtttgtattctcagtttcaccggtctcttttcgtcttgaaca 41113398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 33788362 - 33788255
Alignment:
Q  133 tttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataa 227  Q
    |||||||||||||||||||| |||||||||||||     |||||||||||  | |||||||||||| |||||||| | || |||| ||||| || |||||    
T  33788362 tttattttcgggtgttccgcatatatacggcgcctttagtttgtattctcggtatcaccggtctctgttcgtctttagcagagatttggtt-ttaaataa 33788264  T
Q  228 tatttgctg 236  Q
     ||||||||    
T  33788263 aatttgctg 33788255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 22884869 - 22884746
Alignment:
Q  116 ggggtgtttt-tagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaa 209  Q
    |||||||||| || || |||||||||||||||||||||||||||||| ||||     ||||||||||| || ||  |||||| | |||||||||| || |    
T  22884869 ggggtgttttgtatggagtttattttcgggtgttccgcctatatacgacgcctttagtttgtattctctatatcgtcggtctttgttcgtcttgagcaga 22884770  T
Q  210 gatctggttgtttaataatatttg 233  Q
    ||| ||||| || ||||| |||||    
T  22884769 gatttggtttttaaataaaatttg 22884746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 233
Target Start/End: Original strand, 29997279 - 29997394
Alignment:
Q  123 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttg-----tattctcaatttcaccggtctctcttcgtcttgaacaaagatctggt 217  Q
    ||||||| ||||||||||||| |||||||| ||||||||| ||||||      |||| ||||||||| |||||||| |||||||| | || ||| | | |    
T  29997279 ttttaggatgtttattttcggatgttccgcttatatacggtgccttttgtttttattttcaatttcatcggtctctgttcgtctttaccagagaccagat 29997378  T
Q  218 tgtttaataatatttg 233  Q
    |||||||||| |||||    
T  29997379 tgtttaataaaatttg 29997394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 1269835 - 1269900
Alignment:
Q  167 tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataatatttg 233  Q
    |||||||||||||||||||||| |||| ||||||||||||| |||| || ||||| ||||| |||||    
T  1269835 tttgtattctcaatttcaccggcctct-ttcgtcttgaacagagatttgattgttaaataaaatttg 1269900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 10173440 - 10173289
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttagg--------tggattttggtgggtgttg 110  Q
    |||||||||| ||||| ||||| ||| |||||||||||||||| |||| |||| |||||  |||| |||||||        || |||||| ||||| |||    
T  10173440 gtgagtagtgacgatgagtggtgttgtatatcgtttttacagtagtcgttttcatgaagacgtctgttttaggccgtgacatgtattttgatgggtattg 10173341  T
Q  111 tcattgg-ggtgt-ttttagggtgtttattttcgggtgttccgcctatatac 160  Q
    || |  | ||| | ||||||||||||||||||| ||||||||||||||||||    
T  10173340 tcctcagaggtatcttttagggtgtttattttcaggtgttccgcctatatac 10173289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 33533504 - 33533376
Alignment:
Q  116 ggggtgtttttagggtgtttattttcgggtg------ttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttga 204  Q
    ||||||||||||||||||||||||||  |||      ||||||||||||| ||||||     ||||||| || | ||||||| |||||| ||||||||||    
T  33533504 ggggtgtttttagggtgtttattttcaagtgttccgcttccgcctatatatggcgccttttgtttgtatccttagtttcaccagtctctgttcgtcttga 33533405  T
Q  205 acaaagatctggttgtttaataatatttg 233  Q
     || |||||||| |||| ||||| |||||    
T  33533404 gcagagatctggctgttaaataaaatttg 33533376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 4472276 - 4472323
Alignment:
Q  122 tttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    |||||| ||||||||||||||| ||||||| ||||||||| |||||||    
T  4472276 tttttatggtgtttattttcggatgttccgtctatatacgacgccttt 4472323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 27740331 - 27740368
Alignment:
Q  132 gtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  27740331 gtttattttcgggtgttccacctatatacgacgccttt 27740368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 33533552 - 33533507
Alignment:
Q  43 tggatatcgtttttacagtggtcgctttcgtgaaggggtctatttt 88  Q
    ||||||||||||| |||||||| ||||| |||||||||||| ||||    
T  33533552 tggatatcgttttaacagtggttgcttttgtgaaggggtctgtttt 33533507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 10772908 - 10772968
Alignment:
Q  167 tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataa 227  Q
    |||||||||| | ||||| |||||||| |||||||||||||  |||  |||||||||||||    
T  10772908 tttgtattcttagtttcatcggtctctgttcgtcttgaacagggattaggttgtttaataa 10772968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 25504629 - 25504589
Alignment:
Q  129 ggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    |||||||||||| ||||||| || |||||||||||||||||    
T  25504629 ggtgtttatttttgggtgtttcgtctatatacggcgccttt 25504589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 37559839 - 37559879
Alignment:
Q  167 tttgtattctcaatttcaccggtctctcttcgtcttgaaca 207  Q
    ||||||||||||||||||||| ||||| |||||||| ||||    
T  37559839 tttgtattctcaatttcaccgatctctgttcgtcttaaaca 37559879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 41117744 - 41117600
Alignment:
Q  95 attttggtgggtgttgtcattggggtgtt-tttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccgg 188  Q
    |||||||||||||||||| |   |||||| ||||||||||||||||||||||||||||||||||||||  |||     |||||| ||||||||||||| |    
T  41117744 attttggtgggtgttgtcctcatggtgttatttagggtgtttattttcgggtgttccgcctatatacgatgcctcttgtttgtagtctcaatttcacctg 41117645  T
Q  189 tctctcttcgtcttgaacaaagatctggttgtttaataatatttg 233  Q
    ||||| |||||||||| || |||||| |||||||||||| |||||    
T  41117644 tctctgttcgtcttgagcagagatctagttgtttaataaaatttg 41117600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 38637092 - 38636863
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttg 110  Q
    |||||||||| |||||||||||  |||||||| ||||||||| ||| | ||||||||||| || | ||||||||||        ||||| ||||||||||    
T  38637092 gtgagtagtgacgatgggtggt--tggatatcatttttacagcggttgttttcgtgaaggagtttgttttaggtggtgacatgtattttcgtgggtgttg 38636995  T
Q  111 tcattggggtgttt--ttagggtgtttattttcgggtgttccgcctatatacggcgcct-----ttgtattctcaatttcaccggtctctcttcgtcttg 203  Q
    || | ||||  |||  ||| ||||||||||||| ||||||||||||| |||||||||||     ||||| ||||| |||||||||||||| |||||| ||    
T  38636994 tcctcgggggttttatttaaggtgtttattttcaggtgttccgccta-atacggcgcctcttgtttgtagtctcattttcaccggtctctgttcgtcctg 38636896  T
Q  204 aacaaagatctggttgtttaataatatttgctg 236  Q
    |||   || ||||||||||||||| ||||||||    
T  38636895 aacggggacctggttgtttaataaaatttgctg 38636863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 28967208 - 28967330
Alignment:
Q  122 tttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctgg 216  Q
    |||||||||||||||||||| |||||||||||||||||| |||||     |||||||| ||  |||||||| ||||| |||||||||| || | ||||||    
T  28967208 tttttagggtgtttattttcaggtgttccgcctatatacagcgcctttcgtttgtattatctgtttcaccgatctctgttcgtcttgagcagaaatctgg 28967307  T
Q  217 ttgtttaataatatttgctgattc 240  Q
    || || ||||| ||||||||||||    
T  28967308 tt-ttaaataaaatttgctgattc 28967330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 42719494 - 42719605
Alignment:
Q  127 agggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtt 221  Q
    ||||||||||||||| ||| |||||| ||||||||||| |     |||||||||||| |||||||||||||| |||||||||| ||  ||| || |||||    
T  42719494 agggtgtttattttcaggttttccgcttatatacggcgtcttttgtttgtattctcagtttcaccggtctctattcgtcttgagcagggatttgattgtt 42719593  T
Q  222 taataatatttg 233  Q
    |||||| |||||    
T  42719594 taataaaatttg 42719605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 22810916 - 22810834
Alignment:
Q  126 tagggtgtttattttcgggtgttccgcctatatacggcgcctttgt----attctcaatttcaccggtctctcttcgtcttga 204  Q
    ||||||||||| |||||| | |||||| ||||||||||||||||||    ||||||||||||||| |||||| ||||||||||    
T  22810916 tagggtgtttactttcggatattccgcttatatacggcgcctttgtttgtattctcaatttcaccagtctctgttcgtcttga 22810834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 49747749 - 49747977
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttg 110  Q
    |||||||||| | ||||| ||| |||||| ||||||||||| |||||| ||||||||| | |||| ||||||||||        ||||||||||||||||    
T  49747749 gtgagtagtgacaatgggcggtgttggat-tcgtttttacaatggtcgttttcgtgaaagagtctgttttaggtggtgacatgaattttggtgggtgttg 49747847  T
Q  111 tcat-tggggtg-tttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttg 203  Q
    || |  | |||| |||||| |||||||||||| || |||||||| ||||||||  | |     ||||||| || ||||||||| |||||| |||||||||    
T  49747848 tcctcagaggtgttttttatggtgtttatttttggatgttccgcatatatacgatgtcttttgtttgtatgctaaatttcaccagtctctattcgtcttg 49747947  T
Q  204 aacaaagatctggttgtttaataatatttg 233  Q
    | | |  || |||||||||||||| |||||    
T  49747948 agcgagaatatggttgtttaataaaatttg 49747977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 22811019 - 22810949
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttagg 91  Q
    |||||||||| |||||| |||||  ||||||||||||||||||||||| ||||||||||  |||| |||||||    
T  22811019 gtgagtagtgacgatggatggta--ggatatcgtttttacagtggtcggtttcgtgaagcagtctgttttagg 22810949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 12296381 - 12296429
Alignment:
Q  20 tgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctt 69  Q
    |||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  12296381 tgagtagtggcgatgggtggttatggatatcgttttt-cagtggtcgctt 12296429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 16832794 - 16832721
Alignment:
Q  97 tttggtgggtgttgtcattggg-gtgtttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    |||||||||||||||| |  || | ||||||||||||||||||||  |||||||||||||||| | ||||||||    
T  16832794 tttggtgggtgttgtcctcaggagagtttttagggtgtttattttttggtgttccgcctatatgcagcgccttt 16832721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 19311203 - 19311069
Alignment:
Q  42 ttggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttgtcatt-ggggtgtttttagggtg 132  Q
    ||||||||||||||||||||| ||| |||||||||||  ||| |||  |||||        ||||||||||||||| ||    |||| ||||||||||||    
T  19311203 ttggatatcgtttttacagtgctcgttttcgtgaaggaatctgtttatggtggtgacgtgtattttggtgggtgttatccccaggggagtttttagggtg 19311104  T
Q  133 tttattttcgggtgttccgcctatatacggcgcct 167  Q
    |||| |||||| |||||||||||| ||||| ||||    
T  19311103 tttaatttcggatgttccgcctatttacggtgcct 19311069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 48098645 - 48098686
Alignment:
Q  128 gggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  48098645 gggtgtttattttcgggtgttccgcctatatactgcgtcttt 48098686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 52009083 - 52009135
Alignment:
Q  42 ttggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg 94  Q
    |||||||||||||||||||||||||||| | ||| || |||| ||||||||||    
T  52009083 ttggatatcgtttttacagtggtcgcttccatgacggagtctgttttaggtgg 52009135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 25754204 - 25754251
Alignment:
Q  118 ggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgc 165  Q
    |||||||||| ||||||||||||| | ||||||| |||||||||||||    
T  25754204 ggtgtttttatggtgtttattttcagatgttccgtctatatacggcgc 25754251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 39420784 - 39420745
Alignment:
Q  122 tttttagggtgtttattttcgggtgttccgcctatatacg 161  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  39420784 tttttatggtgttcattttcgggtgttccgcctatatacg 39420745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 41231494 - 41231445
Alignment:
Q  117 gggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcct 167  Q
    ||||||||||| |||||||||||| || ||||||| |||||||||||||||    
T  41231494 gggtgtttttatggtgtttatttt-ggatgttccgtctatatacggcgcct 41231445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 9262826 - 9262895
Alignment:
Q  167 tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataatatttgctg 236  Q
    |||||||||||| ||||| |||||| | |||||||||| |   ||| |||||||||||||| ||||||||    
T  9262826 tttgtattctcagtttcatcggtctttgttcgtcttgagcggggatttggttgtttaataaaatttgctg 9262895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 38930120 - 38930169
Alignment:
Q  121 gtttttagggtgtttatttt-cgggtgttccgcctatatacggcgccttt 169  Q
    ||||||| |||||||||||| |||||||||| |||||||||||| |||||    
T  38930120 gtttttatggtgtttatttttcgggtgttccacctatatacggctccttt 38930169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 48098556 - 48098613
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaa 76  Q
    |||||||||| ||| |||| ||  |||||||||||||||||||||||| ||| |||||    
T  48098556 gtgagtagtgacgacgggttgtgatggatatcgtttttacagtggtcgtttttgtgaa 48098613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 35336914 - 35336950
Alignment:
Q  133 tttattttcgggtgttccgcctatatacggcgccttt 169  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  35336914 tttattttcggatgttccgtctatatacggcgccttt 35336950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 20701661 - 20701430
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtg-------------gattttggtggg 105  Q
    |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||| || ||||||             |  |||| ||||    
T  20701661 gtgagtagtgacgatgggtagtattggatatcgtttttacagtggttgctttcgtgaatgggtctgttataggtggtgaagtgttttagggtttgatggg 20701562  T
Q  106 tgttgtcattg-gggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgt 199  Q
    ||||||| | | ||||| |||||| |||||||||| | |||||||||||||||||| |||||     |||||||||||| |||||||| ||||| |||||    
T  20701561 tgttgtcctcgtgggtg-ttttagtgtgtttatttccaggtgttccgcctatatacagcgccttttgtttgtattctcagtttcaccgatctctgttcgt 20701463  T
Q  200 cttgaacaaagatctggttgtttaataatatttg 233  Q
    |||| | |  ||| |||||||||||||| |||||    
T  20701462 cttg-agagggatttggttgtttaataaaatttg 20701430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 3880363 - 3880244
Alignment:
Q  119 gtgtttttagggtgtttattttcgggtgttccgcctatatacggcgccttt-----gtattctcaatttcaccggtctctcttcgtcttgaacaaagatc 213  Q
    ||||||||||||||||||||||  |||||||||| |||||||||  |||||     ||||| ||| |||||||||||||| |||||||||| ||  ||||    
T  3880363 gtgtttttagggtgtttattttttggtgttccgcttatatacggaaccttttgtttgtattttcagtttcaccggtctctgttcgtcttgagcagggatc 3880264  T
Q  214 tggttgtttaataatatttg 233  Q
    || ||||||||||| |||||    
T  3880263 tgattgtttaataaaatttg 3880244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 6860360 - 6860476
Alignment:
Q  118 ggtgtttttagggtgtttattttcgggtgttccg--cctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaag 210  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||| |     |||||||||| | |||||||| ||| | ||| |||||| ||  |    
T  6860360 ggtgtttttagggtgtttatttttgggtgttccgcccctatatacggcgtcttttgtttgtattcttagtttcaccgatctatattcatcttgagcaggg 6860459  T
Q  211 atctggttgtttaataa 227  Q
    |||| ||||||||||||    
T  6860460 atctagttgtttaataa 6860476  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 17278201 - 17278163
Alignment:
Q  131 tgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  17278201 tgtttattttcgggtgttccgcctatatacgacgccttt 17278163  T

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Target: scaffold0050 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 36951 - 37150
Alignment:
Q  42 ttggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttgtcat--tggggtgtttttagggt 131  Q
    |||||| |||||||||||||||| | ||||||||||| |||| ||||||||||        |||||| ||||||| ||| |  ||||   |||||| |||    
T  36951 ttggatgtcgtttttacagtggtgg-tttcgtgaaggagtctgttttaggtggtgacgtgtattttgttgggtgtggtcctcatgggtgttttttatggt 37049  T
Q  132 gtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaata 226  Q
    |||||||||||| |||||||||||||||| ||| |     |||||||| ||| |||||||||||||| |||||||||| ||  |||| ||||||||||||    
T  37050 gtttattttcggatgttccgcctatatacagcgtcttttgtttgtattatcagtttcaccggtctctgttcgtcttgagcagggatcaggttgtttaata 37149  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 17656597 - 17656437
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgcttt-cgtgaaggggtctattttaggtgg--------attttggtgggtgtt 109  Q
    |||||||||| | ||| | ||| ||||||||||||||| ||||||||| ||| | |||||| |||| |||||| |||        |||||||||||||||    
T  17656597 gtgagtagtgacaatgagcggtgttggatatcgtttttgcagtggtcgtttttcttgaaggagtctgttttagatggtgacgtgaattttggtgggtgtt 17656498  T
Q  110 gtcattg-gggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    ||| |   |||||||||||||||||| |||||||||||||||| ||||||||| |||||||    
T  17656497 gtcctcaagggtgtttttagggtgttaattttcgggtgttccgtctatatacgacgccttt 17656437  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 10248427 - 10248266
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggtgttg 110  Q
    |||||||||| ||||||||| | | |||| |||||||||||||||||| ||||||||||| || | ||||||||||        ||||||| ||||||||    
T  10248427 gtgagtagtgacgatgggtgttgtgggatgtcgtttttacagtggtcgttttcgtgaaggagtttgttttaggtggtgacgtgtattttggcgggtgttg 10248328  T
Q  111 tcat-tggggtg-tttttagggtg-tttattttcgggtgttccgcctatatacggcgccttt 169  Q
    || |   ||||| |||||| |||| ||| |||| |||||||||||||||||||| |||||||    
T  10248327 tcctcaagggtgttttttaaggtgtttttttttagggtgttccgcctatatacgacgccttt 10248266  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 12197822 - 12197708
Alignment:
Q  123 ttttagggtgtttattttcgggtgttccgcctatatacggcgccttt-----gtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggt 217  Q
    |||||||||||||||||||  |||||||||||||| ||| |||||||     ||||||||   ||||||| ||||| |||||||||| || |||||| ||    
T  12197822 ttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgagcatagatctcgt 12197723  T
Q  218 tgtttaataatattt 232  Q
    |||| ||||| ||||    
T  12197722 tgttaaataaaattt 12197708  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 12442250 - 12442136
Alignment:
Q  123 ttttagggtgtttattttcgggtgttccgcctatatacggcgccttt-----gtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggt 217  Q
    |||||||||||||||||||  |||||||||||||| ||| |||||||     ||||||||   ||||||| ||||| |||||||||| || |||||| ||    
T  12442250 ttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctctattcgtcttgagcatagatctcgt 12442151  T
Q  218 tgtttaataatattt 232  Q
    |||| ||||| ||||    
T  12442150 tgttaaataaaattt 12442136  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 8862399 - 8862322
Alignment:
Q  95 attttggtgggtgttgtcatt-ggggtgttttt-agggtgtttatttt-cgggtgttccgcctatatacggcgccttt 169  Q
    ||||| |||||||||||| || ||||||||||| | |||||||||||| ||| ||||||| |||||||||||||||||    
T  8862399 atttttgtgggtgttgtccttcggggtgttttttatggtgtttatttttcggatgttccgtctatatacggcgccttt 8862322  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 43312378 - 43312287
Alignment:
Q  145 tgttccgcctatatacggcgcctt---tgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgtttaataatatttg 233  Q
    ||||||||||||||| ||||||||   || ||||||| ||||| |||||||| |||||||||| || ||| | ||| ||| ||||| |||||    
T  43312378 tgttccgcctatatatggcgcctttagtgcattctcagtttcatcggtctctattcgtcttgagcagagaccaggtggttaaataaaatttg 43312287  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 43312497 - 43312424
Alignment:
Q  21 gagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg 94  Q
    |||||||| |||||  |||| | ||||||||||||||||||||||| ||| ||| ||| ||||  |||||||||    
T  43312497 gagtagtgacgatgtatggtgtgggatatcgtttttacagtggtcgtttttgtgtaggagtctgatttaggtgg 43312424  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 2273799 - 2273759
Alignment:
Q  122 tttttagggtgtttattttcgggtgttccgcctatatacgg 162  Q
    |||||||||||||||||||| |||||||||| | |||||||    
T  2273799 tttttagggtgtttattttcaggtgttccgcttttatacgg 2273759  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 5215044 - 5215008
Alignment:
Q  132 gtttattttcgggtgttccgcctatatacggcgcctt 168  Q
    |||| |||||||||||| |||||||||||||||||||    
T  5215044 gtttgttttcgggtgtttcgcctatatacggcgcctt 5215008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 10552609 - 10552645
Alignment:
Q  129 ggtgtttattttcgggtgttccgcctatatacggcgc 165  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  10552609 ggtgtttgttttcggatgttccgcctatatacggcgc 10552645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 30235857 - 30235817
Alignment:
Q  129 ggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    ||||||| ||||||| |||||||||||||||||| ||||||    
T  30235857 ggtgtttgttttcggatgttccgcctatatacggagccttt 30235817  T

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Target: scaffold0063 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 58456 - 58508
Alignment:
Q  117 gggtgtttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 169  Q
    ||||||||||||||| |||||||| ||||||||  ||||||||||||||||||    
T  58456 gggtgtttttagggtatttatttttgggtgttctacctatatacggcgccttt 58508  T

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Target: scaffold0063; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 58349 - 58424
Alignment:
Q  19 gtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg 94  Q
    |||||||||| ||| |||| || |||||||||  ||||||| |||||| ||||||||||| |||| |||| |||||    
T  58349 gtgagtagtgacgacgggtagtgttggatatcagttttacaatggtcgttttcgtgaaggagtctgtttttggtgg 58424  T

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Target: scaffold1384 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 1513 - 1352
Alignment:
Q  22 agtagtggcgatgggtggtattggatatcgtttttacagtggtcgctttcgtgaaggggtctattttaggtgg--------attttggtgggt---gttg 110  Q
    ||||||| ||| | ||||| ||||||||||||||||||||||| | | ||||| ||| |||  ||||||||||        ||||| ||||||   ||||    
T  1513 agtagtgacgacgtgtggtgttggatatcgtttttacagtggttgttctcgtgtaggagtcagttttaggtggtgacgtgtatttttgtgggttttgttg 1414  T
Q  111 tcatt-ggggtgttttt-agggtgtttatttt-cgggtgttccgcctatatacggcgccttt 169  Q
    || || ||||||||||| | |||||||||||| ||||||||| |||||||||||||||||||    
T  1413 tccttaggggtgttttttatggtgtttatttttcgggtgttctgcctatatacggcgccttt 1352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 41911 - 41802
Alignment:
Q  128 gggtgtttattttcgggtgttccgcctatatacggcgcc-----tttgtattctcaatttcaccggtctctcttcgtcttgaacaaagatctggttgttt 222  Q
    ||||||||||| | ||||||| ||||| | |||| ||||     |||||||||||||||||||||| |||| ||||||||||||| |||| || |||||     
T  41911 gggtgtttattcttgggtgtttcgcctttgtacgacgcctttaatttgtattctcaatttcaccggcctct-ttcgtcttgaacagagatttgattgtta 41813  T
Q  223 aataatatttg 233  Q
    ||||| |||||    
T  41812 aataaaatttg 41802  T

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