View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12611_low_44 (Length: 275)

Name: NF12611_low_44
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12611_low_44
NF12611_low_44
[»] chr2 (6 HSPs)
chr2 (1-259)||(9635351-9635609)
chr2 (140-259)||(38619165-38619282)
chr2 (141-242)||(17312728-17312829)
chr2 (154-233)||(26885906-26885985)
chr2 (133-242)||(19991566-19991675)
chr2 (1-76)||(17312589-17312663)
[»] chr3 (5 HSPs)
chr3 (1-259)||(54586320-54586576)
chr3 (4-258)||(6162112-6162364)
chr3 (154-238)||(35309860-35309944)
chr3 (141-259)||(52972645-52972762)
chr3 (154-238)||(11518983-11519067)
[»] chr1 (6 HSPs)
chr1 (4-259)||(50515252-50515504)
chr1 (1-259)||(44713160-44713415)
chr1 (156-242)||(16767977-16768063)
chr1 (198-242)||(6851379-6851423)
chr1 (1-241)||(45910472-45910711)
chr1 (154-182)||(44827136-44827164)
[»] chr8 (6 HSPs)
chr8 (98-259)||(14822461-14822620)
chr8 (1-242)||(754008-754249)
chr8 (140-258)||(23710732-23710848)
chr8 (141-242)||(9173918-9174019)
chr8 (200-259)||(9710515-9710572)
chr8 (154-243)||(40456352-40456441)
[»] chr6 (2 HSPs)
chr6 (1-259)||(18459825-18460085)
chr6 (136-242)||(24133328-24133434)
[»] chr5 (6 HSPs)
chr5 (1-242)||(38965581-38965821)
chr5 (143-259)||(20236378-20236491)
chr5 (141-259)||(23352191-23352307)
chr5 (1-259)||(25761158-25761413)
chr5 (140-242)||(13850916-13851018)
chr5 (154-238)||(31063701-31063785)
[»] chr7 (3 HSPs)
chr7 (1-242)||(41257420-41257660)
chr7 (143-259)||(19215449-19215563)
chr7 (1-75)||(15889270-15889344)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 9635609 - 9635351
Alignment:
Q  1 ggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaaggagcacagtttttgtactggtgttgttcggattaaaaaatctgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9635609 ggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaatgagcacagtttttgtactggtgttgttcggattaaaaaatctgaaa 9635510  T
Q  101 tgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9635509 tgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctaaaattcaaataagggaaggtt 9635410  T
Q  201 tatatacacattatctttgcactcagacgaaaatgatgatgtgttaacctcccttgatg 259  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9635409 tatatacacattatctttgcactcagatgaaaatgatgatgtgttaacctcccttgatg 9635351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 38619282 - 38619165
Alignment:
Q  140 cagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaatgatga 239  Q
    ||||||||||||||||||||||||||||||||| |||||| ||  |||||  || ||||||||||||||||||| ||||||| |||| ||||||||||||    
T  38619282 cagtacagatcatatgacgtgatcaaaaggaaatcgcctaaaaaacaaattgggaaaggtttatatacacattacctttgcattcagtcgaaaatgatga 38619183  T
Q  240 tgtgttaacctcccttgatg 259  Q
      |||||||| |||||||||    
T  38619182 --tgttaaccccccttgatg 38619165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 17312728 - 17312829
Alignment:
Q  141 agtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaatgatgat 240  Q
    |||||| ||||||||||||||||||||||||| |||||| ||  | |||  | |||||||||||||||||||| ||||||| |||| |||||||||||||    
T  17312728 agtacaaatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatgggagaaggtttatatacacattacctttgcattcagtcgaaaatgatgat 17312827  T
Q  241 gt 242  Q
    ||    
T  17312828 gt 17312829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 26885985 - 26885906
Alignment:
Q  154 tgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaa 233  Q
    ||||||||||||||||||||||||||||| | |||||| ||| | |||||||| | |||| ||||||| |||||||||||    
T  26885985 tgacgtgatcaaaaggaaagcgcctagaaattaaataaaggaggttttatataaatattacctttgcattcagacgaaaa 26885906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 19991566 - 19991675
Alignment:
Q  133 attgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaa 232  Q
    |||||||||||||||||    |||  || |||||| |||| ||||||||| || ||| ||| ||||||||||||||||||| ||||||| |||  |||||    
T  19991566 attgctccagtacagatttgttgatctggtcaaaacgaaaacgcctagaaatcgaatgaggcaaggtttatatacacattacctttgcattcattcgaaa 19991665  T
Q  233 atgatgatgt 242  Q
    ||||||||||    
T  19991666 atgatgatgt 19991675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 17312589 - 17312663
Alignment:
Q  1 ggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaaggagcacagtttttgtactggtg 76  Q
    |||||||||  ||||||||||| ||||||||||||| ||||| | |||||||| || |||||||| ||||||||||    
T  17312589 ggcatcaaccagaacaaccatatctgaaaacagtgc-aagcatagtcagaaaatgaacacagtttctgtactggtg 17312663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 54586576 - 54586320
Alignment:
Q  1 ggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaaggagcacagtttttgtactggtgttgttcggattaaaaaatctgaaa 100  Q
    ||||||||| |||||||||||||||||||||| ||||||||||| |||||||| || || | ||||||||||||||||||||||||||  |||||  |||    
T  54586576 ggcatcaaccggaacaaccataactgaaaacaatgcgaagcagagtcagaaaatgaacataatttttgtactggtgttgttcggattactaaatcctaaa 54586477  T
Q  101 tgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtt 200  Q
       ||||||||||||| || ||||||||||| ||   ||||||||||||| |||||||||||||||||||||  ||||| ||  | |||  | |||  ||    
T  54586476 catatgaatgcagtcccgaatttatttttcggataaatccagtacagatcgtatgacgtgatcaaaaggaaattgcctaaaaaacgaatgggagaaattt 54586377  T
Q  201 tatatacacattatctttgcactcagacgaaaatgatgatgtgttaacctcccttgatg 259  Q
    |||||||||| || ||||||| |||||||||||||||||  |||||||| |||||||||    
T  54586376 tatatacacactacctttgcattcagacgaaaatgatga--tgttaaccccccttgatg 54586320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 6162112 - 6162364
Alignment:
Q  4 atcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaaggagcacagtttttgtactggtgttgttcggattaaaaaatctgaaatgc 103  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||||| || |||||||| || ||||||| | | |||| |   |||||   || ||    
T  6162112 atcaacaggaacaaccatgactgaaaacagtgcgaagtagagtcagaaaatgaacacagtttctgcactggtgctctccggaatccgaaatccagaacgc 6162211  T
Q  104 atgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttat 203  Q
    |||||||||| || ||||| |  || || |    | || |  | ||||||  |||||||||||||  || |||||| || || | || || |||||||||    
T  6162212 atgaatgcagaccggatttaacattccggaacagtacaatgaatatcatacaacgtgatcaaaagttaatcgcctaaaaatcgactagggaaaggtttat 6162311  T
Q  204 atacacattatctttgcactcagacgaaaatgatgatgtgttaacctcccttgat 258  Q
    |||||||||| ||||||| |||||||||||||||||  |||||||| ||||||||    
T  6162312 atacacattacctttgcattcagacgaaaatgatga--tgttaaccccccttgat 6162364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 35309860 - 35309944
Alignment:
Q  154 tgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaatgatg 238  Q
    ||||||||||||||||||| ||| ||||| |||||| ||||| | |||||||| |||||| ||||||| |||||| |||||||||    
T  35309860 tgacgtgatcaaaaggaaaacgcttagaaatcaaatgagggaggttttatataaacattacctttgcattcagacaaaaatgatg 35309944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 52972645 - 52972762
Alignment:
Q  141 agtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataaggg-aaggtttatatacacattatctttgcactcagacgaaaatgatga 239  Q
    |||||| |||||||||||||||||||| |||| |||||| ||  | |||  ||| |||||||||| |||||||| ||||||| |||| ||||||||||||    
T  52972645 agtacaaatcatatgacgtgatcaaaaagaaatcgcctaaaaaacgaatggggggaaggtttatacacacattacctttgcattcagtcgaaaatgatga 52972744  T
Q  240 tgtgttaacctcccttgatg 259  Q
      |||||||| |||||||||    
T  52972745 --tgttaaccccccttgatg 52972762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 11518983 - 11519067
Alignment:
Q  154 tgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaatgatg 238  Q
    |||||||||||||| |||| | ||||||| |||||| ||||| | |||||||| |||||| |||||||  || ||||||||||||    
T  11518983 tgacgtgatcaaaaagaaaacacctagaaatcaaatgagggaggttttatataaacattacctttgcatacatacgaaaatgatg 11519067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 50515504 - 50515252
Alignment:
Q  4 atcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaaggagcacagtttttgtactggtgttgttcggattaaaaaatctgaaatgc 103  Q
    |||||| ||||||||||||  |||||||||||| | ||| | ||| |||| || |||||||||||||||||||| || ||||||   || || | || ||    
T  50515504 atcaaccggaacaaccatatatgaaaacagtgc-atgcatagtcaaaaaatgaacacagtttttgtactggtgtagtccggatttcgaattccggaaagc 50515406  T
Q  104 atgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttat 203  Q
    |||||| |||||| ||||  ||  | || |  | | ||||||||||||||||||||||||||||||||| |||||| ||  |||||  || |||||||||    
T  50515405 atgaatccagtccggattgcatagtccggaaaggtacagtacagatcatatgacgtgatcaaaaggaaatcgcctaaaaaacaaatggggaaaggtttat 50515306  T
Q  204 atacacattatctttgcactcagacgaaaatgatgatgtgttaacctcccttgatg 259  Q
    |||||||||| ||||||| |||| ||||||||||||  |||||||| |||||||||    
T  50515305 atacacattacctttgcattcagtcgaaaatgatga--tgttaaccccccttgatg 50515252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 44713160 - 44713415
Alignment:
Q  1 ggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaaggagcacagtttttgtactggtgttgttcggattaaaaaatctgaaa 100  Q
    ||||||||| |||||||||||| ||||||||| ||| | ||| | |||||||| || |||||||||||||||||||  || |  |||   || || | ||    
T  44713160 ggcatcaaccggaacaaccatatctgaaaacaatgc-aggcatagtcagaaaatgaacacagtttttgtactggtgcagtcctaatttctaactccggaa 44713258  T
Q  101 tgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtt 200  Q
    |||||||||  ||||||||||  ||  | || |  | | ||||||||||||||||||||||||||||||||| |||||| ||  | |||  || ||||||    
T  44713259 tgcatgaatctagtccagattgcatagtccggaaaggtacagtacagatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatggggaaaggtt 44713358  T
Q  201 tatatacacattatctttgcactcagacgaaaatgatgatgtgttaacctcccttgatg 259  Q
    ||||||||||||| ||||||| |||  ||||||||||||  |||||||| |||||||||    
T  44713359 tatatacacattacctttgcattcaaccgaaaatgatga--tgttaaccccccttgatg 44713415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 16767977 - 16768063
Alignment:
Q  156 acgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaatgatgatgt 242  Q
    |||||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||| |||| ||| |||||||||||    
T  16767977 acgtgatcgaaaggaaagcacctagaattcgaatgagggaaggtttatatacacattacctttgcattcagtcgagaatgatgatgt 16768063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 6851379 - 6851423
Alignment:
Q  198 gtttatatacacattatctttgcactcagacgaaaatgatgatgt 242  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||    
T  6851379 gtttatatacacattacctttgcagtcagacgaaaatgatgatgt 6851423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 45910472 - 45910711
Alignment:
Q  1 ggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaaggagcacagtttttgtactggtgttgttcggattaaaaaatctgaaa 100  Q
    ||||| ||| |||||||||||| ||||||||||||| | ||| | |||||||| || |||||||| ||||||||||  || || |||   || ||   ||    
T  45910472 ggcattaaccggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaatgaacacagtttctgtactggtgcagtccgaatttcgaactccagaa 45910570  T
Q  101 tgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtt 200  Q
     |||||||| |||||| ||||  ||  | || |  | | |||||||||||||||||| |||||||||||||| | |||| ||    |||  || ||||||    
T  45910571 cgcatgaatccagtccggattgcatagtccggaaaggtacagtacagatcatatgacatgatcaaaaggaaatcacctaaaaaatgaatggggaaaggtt 45910670  T
Q  201 tatatacacattatctttgcactcagacgaaaatgatgatg 241  Q
    |||||| |||||| ||||||| |||| | ||||||||||||    
T  45910671 tatatatacattacctttgcattcagtcaaaaatgatgatg 45910711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 44827164 - 44827136
Alignment:
Q  154 tgacgtgatcaaaaggaaagcgcctagaa 182  Q
    |||||||||||||||||||||||||||||    
T  44827164 tgacgtgatcaaaaggaaagcgcctagaa 44827136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 98 - 259
Target Start/End: Complemental strand, 14822620 - 14822461
Alignment:
Q  98 aaatgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaag 197  Q
    ||||||||||||||||||| ||||| ||||| || | || |||||||| |||||||||| ||||| ||||||||| ||| || ||||| |||  ||||||    
T  14822620 aaatgcatgaatgcagtccggatttaattttccggaatgttccagtacggatcatatgatgtgattaaaaggaaatcgcttaaaattcgaatgggggaag 14822521  T
Q  198 gtttatatacacattatctttgcactcagacgaaaatgatgatgtgttaacctcccttgatg 259  Q
    |||||||||||||||| |||| || | |||| ||||||||||  |||||||| |||||||||    
T  14822520 gtttatatacacattacctttacatttagacaaaaatgatga--tgttaaccccccttgatg 14822461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 754249 - 754008
Alignment:
Q  1 ggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaaggagcacagtttttgtactggtgttgttcggattaaaaaatctgaaa 100  Q
    ||||||||| |||||||||||| || |||||| ||  | ||| | | |||||| || |||||||| ||| ||||||   |  |||||  |||||||| ||    
T  754249 ggcatcaaccggaacaaccatatctaaaaacattgacaggcatagttagaaaatgaacacagtttctgtgctggtgcactctggatttcaaaatctggaa 754150  T
Q  101 tgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtt 200  Q
     ||||||||||||||| ||||| || ||  | |  | | ||||||||||||||||| ||||||||||||||| |||||| ||  | |||  |||||||||    
T  754149 cgcatgaatgcagtccggatttcatattctggaacggtacagtacagatcatatgaagtgatcaaaaggaaatcgcctaaaaaacgaatgggggaaggtt 754050  T
Q  201 tatatacacattatctttgcactcagacgaaaatgatgatgt 242  Q
    ||||||||||||||||||||| |||| | |||||||||||||    
T  754049 tatatacacattatctttgcattcagtcaaaaatgatgatgt 754008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 140 - 258
Target Start/End: Original strand, 23710732 - 23710848
Alignment:
Q  140 cagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaatgatga 239  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||  | |||  |||||||||||||||||||||| ||||||| |||||||||||||||||    
T  23710732 cagtacatatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatgggggaaggtttatatacacattacctttgcattcagacgaaaatgatga 23710831  T
Q  240 tgtgttaacctcccttgat 258  Q
      |||||||| ||||||||    
T  23710832 --tgttaaccccccttgat 23710848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 9173918 - 9174019
Alignment:
Q  141 agtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaatgatgat 240  Q
    |||||||||||||||||||||||||||| ||| | |||| ||  | |||  |||||||||||||||||||||| ||||||| |||| | |||||||||||    
T  9173918 agtacagatcatatgacgtgatcaaaagaaaatctcctaaaaaacgaatgggggaaggtttatatacacattacctttgcattcagtcaaaaatgatgat 9174017  T
Q  241 gt 242  Q
    ||    
T  9174018 gt 9174019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 9710515 - 9710572
Alignment:
Q  200 ttatatacacattatctttgcactcagacgaaaatgatgatgtgttaacctcccttgatg 259  Q
    |||||||||||||| ||||||| |||| ||||||||||||  |||||||| |||||||||    
T  9710515 ttatatacacattacctttgcattcagtcgaaaatgatga--tgttaaccccccttgatg 9710572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 40456352 - 40456441
Alignment:
Q  154 tgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaatgatgatgtg 243  Q
    |||| |||||||||| ||||| ||||||| | |||| ||||| | |||||||  |||||| ||| | | |||||||||||||||| ||||    
T  40456352 tgacatgatcaaaagaaaagctcctagaaattaaatgagggaggttttatatgaacattaccttcgaattcagacgaaaatgatgttgtg 40456441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 18459825 - 18460085
Alignment:
Q  1 ggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaaggagcacagtttttgtactggtgttgttcggattaaaaaatctgaaa 100  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| ||| || | || |||||||| || ||||||  | | || | |  |||||| | ||    
T  18459825 ggcatcaacaggaacaaccatgactgaaagcagtgcgaagcagagtcaaaagatgaacacagtttctgcactggttctatccgaaattcaaaatccggaa 18459924  T
Q  101 tgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcc-tagaattcaaataagggaaggt 199  Q
     ||||||||||||||| ||||| |  || |  |  | | ||||||||||||||||||||||||||||||||| ||||  | ||  |||||  ||||||||    
T  18459925 cgcatgaatgcagtccggatttgaaattccagaacgtttcagtacagatcatatgacgtgatcaaaaggaaatcgccaaaaaaaacaaatgggggaaggt 18460024  T
Q  200 ---ttatatacacattatctttgcactcagacgaaaatgatgatgtgttaacctcccttgatg 259  Q
       |||||||||||||| ||||||| |||| ||||||||||||  ||||||||||||||||||    
T  18460025 ttattatatacacattacctttgcattcagtcgaaaatgatga--tgttaacctcccttgatg 18460085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 24133328 - 24133434
Alignment:
Q  136 gctccagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaatg 235  Q
    ||||||||||||||    |||| |||||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||| | |||| ||||||||    
T  24133328 gctccagtacagatttgttgacatgatcaaaaggaaagcgcctagaaatcgaatgagggaaggtttatatacacattacctttgaattcagtcgaaaatg 24133427  T
Q  236 atgatgt 242  Q
    |||||||    
T  24133428 atgatgt 24133434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38965821 - 38965581
Alignment:
Q  1 ggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaaggagcacagtttttgtactggtgttgttcggattaaaaaatctgaaa 100  Q
    ||||||||| ||||||||||||| ||||| |||||| ||||| | |||||||| || |||||||| ||||||||||| || ||||||   |||||   ||    
T  38965821 ggcatcaaccggaacaaccataattgaaatcagtgccaagcatagtcagaaaatgaacacagtttctgtactggtgtagtccggatttcgaaatccagaa 38965722  T
Q  101 tgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtt 200  Q
    |||||||||| ||||| || ||  |||| || |    | ||||||| |||||||||| |||||||||| ||| |||||| ||  | |||   ||||||||    
T  38965721 tgcatgaatgtagtccggaattcgttttccggaacagt-cagtacatatcatatgacatgatcaaaagaaaatcgcctaaaaaacgaatggaggaaggtt 38965623  T
Q  201 tatatacacattatctttgcactcagacgaaaatgatgatgt 242  Q
    |||||||||||||  |||| | ||||||||||||||||||||    
T  38965622 tatatacacattacatttgaattcagacgaaaatgatgatgt 38965581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 259
Target Start/End: Original strand, 20236378 - 20236491
Alignment:
Q  143 tacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaatgatgatgt 242  Q
    |||| ||||||||||||||||||||||||| |||||| ||  |||||  |||||||||||||||||||||| ||| ||| |||| ||||||||||||  |    
T  20236378 tacatatcatatgacgtgatcaaaaggaaatcgcctaaaaa-caaatcggggaaggtttatatacacattaccttagcattcagtcgaaaatgatga--t 20236474  T
Q  243 gttaacctcccttgatg 259  Q
    ||||||| |||||||||    
T  20236475 gttaaccccccttgatg 20236491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 23352191 - 23352307
Alignment:
Q  141 agtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaatgatgat 240  Q
    |||||| |||||||||||||||||||||||||  ||||| ||  | |||  || ||||||||||||||||||| ||||||| |||| ||||||||||||     
T  23352191 agtacatatcatatgacgtgatcaaaaggaaattgcctaaaaaacgaatggggaaaggtttatatacacattacctttgcattcagtcgaaaatgatga- 23352289  T
Q  241 gtgttaacctcccttgatg 259  Q
     |||||||| |||||||||    
T  23352290 -tgttaaccgcccttgatg 23352307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 25761413 - 25761158
Alignment:
Q  1 ggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaaggagcacagtttttgtactggtgttgttcggattaaaaaatctgaaa 100  Q
    ||||||||| |||||||||||| ||||||||||||| | ||| | |||||||| || |||||||||||||||||||  || ||||||   || || | ||    
T  25761413 ggcatcaaccggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaatgaacacagtttttgtactggtgcagtccggatttcgaactccggaa 25761315  T
Q  101 tgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtt 200  Q
     |||||||| |||||  ||||  ||  | || |  | | ||||||| ||||||||||||||||||||| |||  ||||| ||    |||  || ||||||    
T  25761314 cgcatgaatccagtctggattgcatagtccggaaaggtacagtacatatcatatgacgtgatcaaaagaaaatagcctaaaaaatcaatggggaaaggtt 25761215  T
Q  201 tatatacacattatctttgcactcagacgaaaatgatgatgtgttaacctcccttgatg 259  Q
    ||||||||||||| ||||||| |||| | ||||||||||  |||||||| |||||||||    
T  25761214 tatatacacattacctttgcattcagtcaaaaatgatga--tgttaaccccccttgatg 25761158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 13850916 - 13851018
Alignment:
Q  140 cagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaa-ggtttatatacacattatctttgcactcagacgaaaatgatg 238  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||  | |||  ||||| ||||||||||||||||| ||||||| |||| |||||||||||    
T  13850916 cagtacaaatcatatgacgtgatcaaaaggaaatcgcctaaaaa-cgaatgggggaaaggtttatatacacattacctttgcattcagtcgaaaatgatg 13851014  T
Q  239 atgt 242  Q
    ||||    
T  13851015 atgt 13851018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 31063701 - 31063785
Alignment:
Q  154 tgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaatgatg 238  Q
    ||||||||||||||||||| | ||||||| || ||| ||||| | ||||||||  |||||  |||||| ||| ||||||||||||    
T  31063701 tgacgtgatcaaaaggaaaacacctagaaatcgaatgagggaggttttatataatcattacatttgcattcacacgaaaatgatg 31063785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 41257420 - 41257660
Alignment:
Q  1 ggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaaggagcacagtttttgtactggtgttgttcggattaaaaaatctgaaa 100  Q
    ||||||||  |||||||||||| ||||||||||||| | ||| | ||||||||  | |||||||| ||||||||||  || ||||||   |||||   ||    
T  41257420 ggcatcaatcggaacaaccatatctgaaaacagtgc-aggcatagtcagaaaataaacacagtttctgtactggtgcagtccggatttcgaaatccagaa 41257518  T
Q  101 tgcatgaatgcagtccagattttatttttcgtattgctccagtacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtt 200  Q
     |||||||| || ||||||||  ||  | || |  | | ||||||| ||||||||||||||||||||||||| |||||| ||  | |||  || ||||||    
T  41257519 cgcatgaatccaatccagattgcatagtccgaaaaggtacagtacatatcatatgacgtgatcaaaaggaaatcgcctaaaaaacgaatggggaaaggtt 41257618  T
Q  201 tatatacacattatctttgcactcagacgaaaatgatgatgt 242  Q
    ||||||||||||| ||||||| |||| |||||||||||||||    
T  41257619 tatatacacattacctttgcattcagtcgaaaatgatgatgt 41257660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 19215563 - 19215449
Alignment:
Q  143 tacagatcatatgacgtgatcaaaaggaaagcgcctagaattcaaataagggaaggtttatatacacattatctttgcactcagacgaaaatgatgatgt 242  Q
    |||||||||||||||||||||||||| |||  ||||| ||  | |||  |||||||||||||||||||||| ||||||| |||| ||||||||||||  |    
T  19215563 tacagatcatatgacgtgatcaaaagaaaattgcctaaaaaactaatgggggaaggtttatatacacattacctttgcattcagtcgaaaatgatga--t 19215466  T
Q  243 gttaacctcccttgatg 259  Q
    ||||||| |||||||||    
T  19215465 gttaaccccccttgatg 19215449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 15889344 - 15889270
Alignment:
Q  1 ggcatcaacaggaacaaccataactgaaaacagtgcgaagcagactcagaaaaggagcacagtttttgtactggt 75  Q
    ||||||||| |||||||||||||||||||||||||| ||||  | |||||||| || || ||||| |||||||||    
T  15889344 ggcatcaaccggaacaaccataactgaaaacagtgccaagcttagtcagaaaatgaacatagtttctgtactggt 15889270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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