View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12611_low_53 (Length: 260)
Name: NF12611_low_53
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_53 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 47923084 - 47923309
Alignment:
| Q |
22 |
ccgaaggctccatagcctaaaagaccacataatgaataaaagattgtgcttattgtgattccaataagagatgatttcttcatgacttgattttctggtg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47923084 |
ccgaaggctccatagcctaaaagaccacataatgaataaaagattgtgcttattgtgattccaataagagatgatttcttcatgacttgattttctggtg |
47923183 |
T |
|
| Q |
122 |
gactagattttaatgtatcctgtgtacaaaaattgaaatcaattcttgttttctacttttcttgttctattataaacctttgttcgcttaaatttaatac |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47923184 |
gactagattttaatgtatcctgtgtacaaaaattgaaatcaattcttgttttctacttttcttgttctattataaacctttgttctcttaaatttaatac |
47923283 |
T |
|
| Q |
222 |
ttgcctgtatttcagcaattacagtg |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
47923284 |
ttgcctgtatttcagcaattacagtg |
47923309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 47901972 - 47902084
Alignment:
| Q |
32 |
catagcctaaaagaccacataatgaataaaagattgtgcttattgtgattccaataagagatgatttcttcatgacttgattttctggtggactagattt |
131 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||| |||| | ||||| |||||| | | | |||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
47901972 |
catatcctacaagaccacataatgcataaaagaatgtggtgattgtaattccagtcaaatttgatttcttcatgacttgattttccggtgggcttgattt |
47902071 |
T |
|
| Q |
132 |
taatgtatcctgt |
144 |
Q |
| |
|
||||||||||||| |
|
|
| T |
47902072 |
taatgtatcctgt |
47902084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 47916668 - 47916780
Alignment:
| Q |
32 |
catagcctaaaagaccacataatgaataaaagattgtgcttattgtgattccaataagagatgatttcttcatgacttgattttctggtggactagattt |
131 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| | ||| | ||||||| | | |||||||||||| |||||||||||||| || || ||||| |
|
|
| T |
47916668 |
catagcctaaaagaccacataatgcataaaagaatgtggtgattataattccaaccaaacttgatttcttcataacttgattttctggcgggcttgattt |
47916767 |
T |
|
| Q |
132 |
taatgtatcctgt |
144 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
47916768 |
taatgtgtcctgt |
47916780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University