View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12611_low_54 (Length: 257)

Name: NF12611_low_54
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12611_low_54
NF12611_low_54
[»] chr3 (3 HSPs)
chr3 (9-184)||(38280166-38280344)
chr3 (142-192)||(23584927-23584977)
chr3 (142-192)||(23599750-23599800)
[»] chr1 (3 HSPs)
chr1 (9-185)||(48619473-48619652)
chr1 (142-191)||(7782735-7782784)
chr1 (142-185)||(8560155-8560198)
[»] chr4 (6 HSPs)
chr4 (21-168)||(29976450-29976600)
chr4 (141-190)||(33569714-33569763)
chr4 (141-184)||(31876788-31876831)
chr4 (142-184)||(12639965-12640007)
chr4 (141-183)||(43079984-43080026)
chr4 (144-184)||(33570322-33570362)
[»] chr5 (3 HSPs)
chr5 (183-250)||(13568372-13568439)
chr5 (142-184)||(4929550-4929592)
chr5 (142-184)||(8813727-8813769)
[»] chr2 (4 HSPs)
chr2 (142-185)||(33847872-33847915)
chr2 (142-176)||(3230138-3230172)
chr2 (142-191)||(9224259-9224308)
chr2 (116-184)||(43743820-43743888)
[»] chr8 (3 HSPs)
chr8 (45-171)||(10199000-10199126)
chr8 (45-171)||(38572997-38573123)
chr8 (142-184)||(44062640-44062682)
[»] chr7 (1 HSPs)
chr7 (142-181)||(19816936-19816975)
[»] chr6 (1 HSPs)
chr6 (133-184)||(32079019-32079070)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 38280166 - 38280344
Alignment:
Q  9 gatggacatcagtggtggtggttggacttggacaaag---gagatgaggtgtaaaggatagatgattagatccggtgtgagagacatatagtaacatgta 105  Q
    |||| |||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38280166 gatgaacattagtggtggtggttggacttggacaaagaaggagatgaggtgtaaaggatagatgattagatccggtgtgagagacatatagtaacatgta 38280265  T
Q  106 atatactctaaaatctgatggttgatcaaaagttgtccatggtggaaaaggattggcctttcccatatgaaatgccacc 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  38280266 atatactctaaaatctgatggttgatcaaaagttgtccatggtgggaaaggattggcctttcccatgtgaaatgccacc 38280344  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 23584927 - 23584977
Alignment:
Q  142 ccatggtggaaaaggattggcctttcccatatgaaatgccaccctattttg 192  Q
    ||||||||| ||||||||  |||||||||| ||||||||||||||||||||    
T  23584927 ccatggtgggaaaggattaacctttcccatgtgaaatgccaccctattttg 23584977  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 23599750 - 23599800
Alignment:
Q  142 ccatggtggaaaaggattggcctttcccatatgaaatgccaccctattttg 192  Q
    ||||||||| ||||||||  |||||||||| ||||||||||||||||||||    
T  23599750 ccatggtgggaaaggattaacctttcccatgtgaaatgccaccctattttg 23599800  T

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Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 48619652 - 48619473
Alignment:
Q  9 gatggacatcagtggtggtggttggacttggacaaag---gagatgaggtgtaaaggatagatgattagatccggtgtgagagacatatagtaacatgta 105  Q
    |||| |||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48619652 gatgaacattagtggtggtggttggacttggacaaagaaggagatgaggtgtaaaggatagatgattagatccggtgtgagagacatatagtaacatgta 48619553  T
Q  106 atatactctaaaatctgatggttgatcaaaagttgtccatggtggaaaaggattggcctttcccatatgaaatgccaccc 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  48619552 atatactctaaaatctgatggttgatcaaaagttgtccatggtgggaaagaattggcctttcccatgtgaaatgccaccc 48619473  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 7782735 - 7782784
Alignment:
Q  142 ccatggtggaaaaggattggcctttcccatatgaaatgccaccctatttt 191  Q
    ||||||| | |||||||||||||||||||| ||||||||||||| |||||    
T  7782735 ccatggtaggaaaggattggcctttcccatgtgaaatgccacccgatttt 7782784  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 8560198 - 8560155
Alignment:
Q  142 ccatggtggaaaaggattggcctttcccatatgaaatgccaccc 185  Q
    ||||||||||||||||||  |||||||||| |||||||||||||    
T  8560198 ccatggtggaaaaggattaacctttcccatgtgaaatgccaccc 8560155  T

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Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 29976450 - 29976600
Alignment:
Q  21 tggtggtggttggacttggacaaag---gagatgaggtgtaaaggatagatgattagatccggtgtgagagacatatagtaacatgtaatatactctaaa 117  Q
    |||||||||||||| ||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29976450 tggtggtggttggagttggacaaagagggagatgaagtgtaaaggatagatgattagatccggtgtgagagacatatagtaacatataatatactctaaa 29976549  T
Q  118 atctgatggttgatcaaaagttgtccatggtggaaaaggattggcctttcc 168  Q
    || | ||||||||| ||||||||||| | ||| |||||||||| |||||||    
T  29976550 atttaatggttgataaaaagttgtccgtagtgaaaaaggattgacctttcc 29976600  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 33569763 - 33569714
Alignment:
Q  141 tccatggtggaaaaggattggcctttcccatatgaaatgccaccctattt 190  Q
    |||||||||| ||||||||| |||||||||| |||||||||||| |||||    
T  33569763 tccatggtgggaaaggattgacctttcccatgtgaaatgccaccatattt 33569714  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 31876831 - 31876788
Alignment:
Q  141 tccatggtggaaaaggattggcctttcccatatgaaatgccacc 184  Q
    |||||||||||||||||||  |||||||||| ||||||||||||    
T  31876831 tccatggtggaaaaggattaacctttcccatgtgaaatgccacc 31876788  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 12640007 - 12639965
Alignment:
Q  142 ccatggtggaaaaggattggcctttcccatatgaaatgccacc 184  Q
    ||||||||||||||||||  |||||||||| ||||||||||||    
T  12640007 ccatggtggaaaaggattaacctttcccatgtgaaatgccacc 12639965  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 43079984 - 43080026
Alignment:
Q  141 tccatggtggaaaaggattggcctttcccatatgaaatgccac 183  Q
    |||||||| ||||||||||| |||||||||| |||||||||||    
T  43079984 tccatggtagaaaaggattgtcctttcccatgtgaaatgccac 43080026  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 33570322 - 33570362
Alignment:
Q  144 atggtggaaaaggattggcctttcccatatgaaatgccacc 184  Q
    ||||||||||||||||| ||||| |||| ||||||||||||    
T  33570322 atggtggaaaaggattgaccttttccatgtgaaatgccacc 33570362  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 13568439 - 13568372
Alignment:
Q  183 ccctattttggtcattatatcccttttgctttcaatcacttatatttgtttcattcacatctctgctt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13568439 ccctattttggtcattatatcccttttgctttcaatcacttatatttgtttcattcacatctttgctt 13568372  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 4929550 - 4929592
Alignment:
Q  142 ccatggtggaaaaggattggcctttcccatatgaaatgccacc 184  Q
    ||||||||||||||||||  |||||||||| ||||||||||||    
T  4929550 ccatggtggaaaaggattaacctttcccatgtgaaatgccacc 4929592  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 8813727 - 8813769
Alignment:
Q  142 ccatggtggaaaaggattggcctttcccatatgaaatgccacc 184  Q
    ||||| ||||||||||||  |||||||||||||||||||||||    
T  8813727 ccatgatggaaaaggattaacctttcccatatgaaatgccacc 8813769  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 33847915 - 33847872
Alignment:
Q  142 ccatggtggaaaaggattggcctttcccatatgaaatgccaccc 185  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  33847915 ccatggtggaaaaggattggcctttcccatgtgaaatgccaccc 33847872  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 176
Target Start/End: Original strand, 3230138 - 3230172
Alignment:
Q  142 ccatggtggaaaaggattggcctttcccatatgaa 176  Q
    |||||||||||||||||||||||||||||| ||||    
T  3230138 ccatggtggaaaaggattggcctttcccatgtgaa 3230172  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 9224308 - 9224259
Alignment:
Q  142 ccatggtggaaaaggattggcctttcccatatgaaatgccaccctatttt 191  Q
    ||||||||| ||||||||  |||||||||| |||||||||||| ||||||    
T  9224308 ccatggtgggaaaggattaacctttcccatgtgaaatgccaccatatttt 9224259  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 43743820 - 43743888
Alignment:
Q  116 aaatctgatggttgatcaaaagttgtccatggtggaaaaggattggcctttcccatatgaaatgccacc 184  Q
    ||||||||||||| |  |||||||  ||||||||| ||||||||  |||||||||| ||||||| ||||    
T  43743820 aaatctgatggttaaaaaaaagtttcccatggtgggaaaggattcacctttcccatgtgaaatgtcacc 43743888  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 10199000 - 10199126
Alignment:
Q  45 ggagatgaggtgtaaaggatagatgattagatccggtgtgagagacatatagtaacatgtaatatactctaaaatctgatggttgatcaaaagttgtcca 144  Q
    ||||||||| |||| | |||||||  || ||||  |||||||| ||| ||  ||| || |||||||||| |||||||||||||| || | |||| |||||    
T  10199000 ggagatgagttgtagaagatagatagttggatctagtgtgagacacacatgataagatataatatactccaaaatctgatggtttattagaagtggtcca 10199099  T
Q  145 tggtggaaaaggattggcctttcccat 171  Q
    |||||| ||||||||  ||||||||||    
T  10199100 tggtgggaaaggattcacctttcccat 10199126  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 38572997 - 38573123
Alignment:
Q  45 ggagatgaggtgtaaaggatagatgattagatccggtgtgagagacatatagtaacatgtaatatactctaaaatctgatggttgatcaaaagttgtcca 144  Q
    ||||||||| |||| | |||||||  || ||||  |||||||| ||| ||  ||| || |||||||||| |||||||||||||| || | |||| |||||    
T  38572997 ggagatgagttgtagaagatagatagttggatctagtgtgagacacacatgataagatataatatactccaaaatctgatggtttattagaagtggtcca 38573096  T
Q  145 tggtggaaaaggattggcctttcccat 171  Q
    |||||| ||||||||  ||||||||||    
T  38573097 tggtgggaaaggattcacctttcccat 38573123  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 44062640 - 44062682
Alignment:
Q  142 ccatggtggaaaaggattggcctttcccatatgaaatgccacc 184  Q
    ||||||||||||||||||  ||||||| |||||||||||||||    
T  44062640 ccatggtggaaaaggattaacctttcctatatgaaatgccacc 44062682  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 19816936 - 19816975
Alignment:
Q  142 ccatggtggaaaaggattggcctttcccatatgaaatgcc 181  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  19816936 ccatggtggaaaaggattaacctttcccatatgaaatgcc 19816975  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 32079070 - 32079019
Alignment:
Q  133 aaaagttgtccatggtggaaaaggattggcctttcccatatgaaatgccacc 184  Q
    ||||||| | |||||||||||||||||  |||||||||| ||||||||||||    
T  32079070 aaaagtttttcatggtggaaaaggattcacctttcccatgtgaaatgccacc 32079019  T

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