View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12611_low_55 (Length: 254)

Name: NF12611_low_55
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12611_low_55
NF12611_low_55
[»] chr1 (2 HSPs)
chr1 (15-239)||(42392419-42392643)
chr1 (55-87)||(13709204-13709236)
[»] chr8 (3 HSPs)
chr8 (55-87)||(8917545-8917577)
chr8 (55-87)||(8917249-8917281)
chr8 (55-87)||(32691761-32691793)
[»] chr6 (1 HSPs)
chr6 (55-87)||(10335385-10335417)
[»] chr7 (1 HSPs)
chr7 (55-87)||(10893878-10893910)
[»] chr5 (1 HSPs)
chr5 (55-87)||(7512217-7512249)
[»] chr4 (2 HSPs)
chr4 (55-87)||(683070-683102)
chr4 (55-87)||(9988708-9988740)
[»] chr3 (1 HSPs)
chr3 (55-87)||(1502592-1502624)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 42392419 - 42392643
Alignment:
Q  15 caaaggcctgtccggtgttcgactcagtcacaacattcgtcacatctgattacattcaattatgtcattttctgtgtcaatgtcgtgtatggtgtctacg 114  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42392419 caaaggcgtgtccggtgttcgactcagtcacaacatttgtcacatctgattacattcaattatgttattttctgtgtcaatgtcgtgtatggtgtctacg 42392518  T
Q  115 tgtgcttcatagcttctaaatcattttgtaaagtgtaaagttgttttaaactcttcataattgtttaataatattcggattgtatcagaacttaatgttt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42392519 tgtgcttcatagcttctaaatcattttgtaaagtgtaaagttgttttaaactcttcataattgtttaataatattcggattgtatcagaacttaatgttt 42392618  T
Q  215 ttatatgaaacagaaataacaacat 239  Q
    |||||||||||||||||||||||||    
T  42392619 ttatatgaaacagaaataacaacat 42392643  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 13709236 - 13709204
Alignment:
Q  55 cacatctgattacattcaattatgtcattttct 87  Q
    ||||||||||||||||||||| |||||||||||    
T  13709236 cacatctgattacattcaattttgtcattttct 13709204  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 8917545 - 8917577
Alignment:
Q  55 cacatctgattacattcaattatgtcattttct 87  Q
    |||||||||||||||||||||||||||||||||    
T  8917545 cacatctgattacattcaattatgtcattttct 8917577  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 8917249 - 8917281
Alignment:
Q  55 cacatctgattacattcaattatgtcattttct 87  Q
    ||||||||||||||||||||||||| |||||||    
T  8917249 cacatctgattacattcaattatgttattttct 8917281  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 32691793 - 32691761
Alignment:
Q  55 cacatctgattacattcaattatgtcattttct 87  Q
    ||||| |||||||||||||||||||||||||||    
T  32691793 cacatgtgattacattcaattatgtcattttct 32691761  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 10335385 - 10335417
Alignment:
Q  55 cacatctgattacattcaattatgtcattttct 87  Q
    |||||||||||||||||||||||||||||||||    
T  10335385 cacatctgattacattcaattatgtcattttct 10335417  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 10893878 - 10893910
Alignment:
Q  55 cacatctgattacattcaattatgtcattttct 87  Q
    ||||| |||||||||||||||||||||||||||    
T  10893878 cacatgtgattacattcaattatgtcattttct 10893910  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 7512249 - 7512217
Alignment:
Q  55 cacatctgattacattcaattatgtcattttct 87  Q
    |||||||||||||||||||| ||||||||||||    
T  7512249 cacatctgattacattcaataatgtcattttct 7512217  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 683102 - 683070
Alignment:
Q  55 cacatctgattacattcaattatgtcattttct 87  Q
    ||||| |||||||||||||||||||||||||||    
T  683102 cacatgtgattacattcaattatgtcattttct 683070  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 9988708 - 9988740
Alignment:
Q  55 cacatctgattacattcaattatgtcattttct 87  Q
    ||||| |||||||||||||||||||||||||||    
T  9988708 cacatgtgattacattcaattatgtcattttct 9988740  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 1502624 - 1502592
Alignment:
Q  55 cacatctgattacattcaattatgtcattttct 87  Q
    ||||| |||||||||||||||||||||||||||    
T  1502624 cacatgtgattacattcaattatgtcattttct 1502592  T

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