View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_58 (Length: 250)
Name: NF12611_low_58
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_58 |
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| [»] scaffold0040 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0081 (1 HSPs) |
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| [»] scaffold0203 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0273 (1 HSPs) |
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Alignment Details
Target: scaffold0040 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 699 - 455
Alignment:
| Q |
6 |
agaagcagagaaagtaaggtcagaagcttgaacatagttagaagcacaagatatcaaaaaatattcagaagcacaaacatagaaaataaacaagctaaag |
105 |
Q |
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| T |
699 |
agaagcacagaaagtaaggtcagaagcttgaacatagtcagaagcacaagatatcaaaaaatattcagaagcacaaacatagaaaataaacaagctaaag |
600 |
T |
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| Q |
106 |
ggtgtgcaattaaggcttagcttgtttttggatcatatccatcagatctctgattaaactgtttgtggtttctggttacttcttcatttcttctctaaac |
205 |
Q |
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| T |
599 |
ggtgtgcaattaaggcttagcttgtttttggatcatatccatcagatctctgattaaactgtttgtggtttctggttgcttcttcatttcttctctaaac |
500 |
T |
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| Q |
206 |
tcattgtttcttctaataagaatgtcttcccttattcttgcttct |
250 |
Q |
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| T |
499 |
tcattgtttcttctaataagattgtcttcccttattcttgcttct |
455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 13002805 - 13002579
Alignment:
| Q |
14 |
agaaagtaaggtcagaagcttgaacatagttagaagcacaagatatcaaaaaatattcagaagcacaaacatagaaaataaacaagctaaagggtgtgca |
113 |
Q |
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| T |
13002805 |
agaaagcaaggtcagaagcatgaacatagtcagaagcacaa----------aatatttagaagcacaaacataaaaaataaacaagctaaagggtgtgca |
13002716 |
T |
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| Q |
114 |
attaaggcttagcttgtttttggatcatatccatcagatctctgattaaactgtttgtggtttctggttacttcttcatttcttctctaaactcattgtt |
213 |
Q |
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| T |
13002715 |
actaaggctttgcttgtttctggaccatgtccatcagatctctgattaagctgtttgtggtttctgattgcttcttcgtttcttctctaaactcaccgtt |
13002616 |
T |
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| Q |
214 |
tcttctaataagaatgtcttcccttattcttgcttct |
250 |
Q |
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| T |
13002615 |
gcttatgataagattttattcacttattcttgcttct |
13002579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0081 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0081
Description:
Target: scaffold0081; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 43259 - 43346
Alignment:
| Q |
64 |
aaatattcagaagcacaaacata--gaaaataaacaagctaaagggtgtgcaattaaggcttagcttgtttttggatcatatccatca |
149 |
Q |
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| T |
43259 |
aaatattcagaagtacaaacaaaaagaaaataaacaagctaaagggtgtgaaactaaggcttggcttgtttttggagcatttccatca |
43346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 13031224 - 13031154
Alignment:
| Q |
78 |
acaaacatagaaaataaacaagctaaagggtgtgcaattaaggcttagcttgtttttggatcatatccatca |
149 |
Q |
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| T |
13031224 |
acaaacaaagaaaataaacaagctaa-gggtgtgcaactaaggttgggcttgtttttggaacatttccatca |
13031154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0203 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0203
Description:
Target: scaffold0203; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 23270 - 23220
Alignment:
| Q |
86 |
agaaaataaacaagctaaagggtgtgcaattaaggcttagcttgtttttgga |
137 |
Q |
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| T |
23270 |
agaaaataaacaagctaaa-ggtgtgcagctaaggcttggcttgtttttgga |
23220 |
T |
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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 144104 - 144162
Alignment:
| Q |
90 |
aataaacaagctaaagggtgtgcaattaaggcttagcttgtttttggatcatatccatca |
149 |
Q |
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| T |
144104 |
aataaacaagctaa-gggtgtgcaactaaggctgtgtttgtttttggatcatctccatca |
144162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0273 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0273
Description:
Target: scaffold0273; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 11515 - 11604
Alignment:
| Q |
109 |
gtgcaattaaggcttagcttgtttttggatcatatccatcagatctctgattaaactgtttgtggtttctggttacttcttcatttcttc |
198 |
Q |
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| T |
11515 |
gtgcaactaagactttgcttgtttttgaaccatatacattaggtctcttatcaaactgtttattgtttctgattgcttcttcatgtcttc |
11604 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 16657768 - 16657713
Alignment:
| Q |
93 |
aaacaagctaaagggtgtgcaattaaggcttagcttgtttttggatcatatccatca |
149 |
Q |
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| T |
16657768 |
aaacaagctaa-gggtgtgcaattaaggttgggcttgtttttggaacatctccatca |
16657713 |
T |
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