View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12611_low_6 (Length: 589)

Name: NF12611_low_6
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12611_low_6
NF12611_low_6
[»] chr7 (7 HSPs)
chr7 (20-359)||(36997062-36997394)
chr7 (466-574)||(36997501-36997609)
chr7 (56-110)||(42208396-42208450)
chr7 (56-110)||(16647911-16647965)
chr7 (56-110)||(17622272-17622326)
chr7 (56-110)||(25498543-25498597)
chr7 (54-110)||(42162870-42162926)
[»] chr5 (3 HSPs)
chr5 (56-110)||(30958214-30958268)
chr5 (56-110)||(28367598-28367652)
chr5 (57-110)||(1532274-1532327)
[»] chr4 (2 HSPs)
chr4 (56-110)||(53981583-53981637)
chr4 (56-104)||(20193209-20193257)
[»] chr3 (3 HSPs)
chr3 (56-110)||(13981273-13981327)
chr3 (56-110)||(13990320-13990374)
chr3 (56-110)||(23343864-23343918)
[»] chr2 (6 HSPs)
chr2 (56-110)||(1525222-1525276)
chr2 (56-110)||(7910580-7910634)
chr2 (56-110)||(22429836-22429890)
chr2 (56-110)||(22435430-22435484)
chr2 (56-110)||(635770-635824)
chr2 (56-110)||(14898271-14898325)
[»] chr1 (2 HSPs)
chr1 (56-110)||(15716112-15716166)
chr1 (56-110)||(33493553-33493607)
[»] scaffold0004 (1 HSPs)
scaffold0004 (56-110)||(346288-346342)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 359
Target Start/End: Original strand, 36997062 - 36997394
Alignment:
Q  20 agacctcaataaaagtttatcatcaannnnnnnaatgtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaatttgcataa 119  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  36997062 agacctcaataaaagtttatcatcaatttttt-aatgtagtgctaaaattttcatataatcggatgatattgatgtatctttaaagtacaatttgcataa 36997160  T
Q  120 tcaattttgtttcaatatctttgaattttctgtcattgataaaactaaaatacaactatatctataaatagccaaatacattatcgtcttcaatcaaatt 219  Q
    || |||| ||||||||||||||||||||     ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36997161 tcgattt-gtttcaatatctttgaattt-----cattgataaaattaaaatacaactatatctataaatagccaaatacattatcgtcttcaatcaaatt 36997254  T
Q  220 aaaatacggtacttcaaaatcaattcaagttcattagtatatggaggcataacatgatctttgtttacatcaaacgacatcgctaacactcgtatacacg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36997255 aaaatacggtacttcaaaatcaattcaagttcattagtatatgaaggcataacatgatctttgtttacatcaaacgacatcgctaacactcgtatacacg 36997354  T
Q  320 acaagttaggtttaaacggtttagtaggtttgatgtataa 359  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  36997355 acaaattaggtttaaacggtttagtaggtttgatgtataa 36997394  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 466 - 574
Target Start/End: Original strand, 36997501 - 36997609
Alignment:
Q  466 caaacttttcgttcagaaaagtatttcatccaacatatttatatcatcagaaaaatcaatcgtaacaaatttctttcnnnnnnnttcttaaaaattgata 565  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       ||||||||||||||||    
T  36997501 caaacttttctttcagaaaagtatttcatccaacatatttatatcatcagaaaaatcaatcataacaaatttctttcaaaaaatttcttaaaaattgata 36997600  T
Q  566 actgatgtc 574  Q
    |||||||||    
T  36997601 actgatgtc 36997609  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 42208450 - 42208396
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| ||||||| ||||||||||||||||| ||| |||||||| |||||    
T  42208450 gtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaa 42208396  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 16647965 - 16647911
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| || |||| ||||||||||||||||| ||| |||||||| |||||    
T  16647965 gtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaa 16647911  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 17622326 - 17622272
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| || |||| ||||||||||||||||| ||| |||||||| |||||    
T  17622326 gtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaa 17622272  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 25498597 - 25498543
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| || |||| ||||||||||||||||| ||| |||||||| |||||    
T  25498597 gtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaa 25498543  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 42162870 - 42162926
Alignment:
Q  54 atgtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||||| ||||||| | |||||||||||| || ||| |||||||| |||||    
T  42162870 atgtagtgctaacattttcaaacgatcggatgatagtgttgtttctctaagatacaa 42162926  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 30958214 - 30958268
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| ||||||| ||||||||||||||||| ||| |||||||| |||||    
T  30958214 gtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaa 30958268  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 28367598 - 28367652
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| ||||||| ||||||||||||||| | ||| |||||||| |||||    
T  28367598 gtagtgctaacattttcaaatgatcggatgatatcgttgtttctctaagatacaa 28367652  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 1532274 - 1532327
Alignment:
Q  57 tagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    ||||| ||| ||||||| ||||||||||||||||| ||| |||||||| |||||    
T  1532274 tagtgttaacattttcaaatgatcggatgatattgttgtttctctaagatacaa 1532327  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 53981637 - 53981583
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| ||||||| ||||||||||||||||| ||| |||||||| |||||    
T  53981637 gtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaa 53981583  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 20193209 - 20193257
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaag 104  Q
    |||||||||| ||||| | ||||||||||||||||| ||| ||||||||    
T  20193209 gtagtgctaacattttgaaatgatcggatgatattgttgtttctctaag 20193257  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 13981273 - 13981327
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| ||||||| ||||||||||||||||| ||| |||||||| |||||    
T  13981273 gtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaa 13981327  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 13990374 - 13990320
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| || |||| ||||||||||||||||| ||| |||||||| |||||    
T  13990374 gtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaa 13990320  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 23343918 - 23343864
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| || |||| ||||||||||||||||| ||| |||||||| |||||    
T  23343918 gtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaa 23343864  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 1525276 - 1525222
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| ||||||| ||||||||||||||||| ||| |||||||| |||||    
T  1525276 gtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagctacaa 1525222  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 7910580 - 7910634
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| ||||||| ||||||||||||||||| ||| |||||||| |||||    
T  7910580 gtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaa 7910634  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 22429890 - 22429836
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| ||||||| ||||||||||||||||| ||| |||||||| |||||    
T  22429890 gtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaa 22429836  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 22435484 - 22435430
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| ||||||| ||||||||||||||||| ||| |||||||| |||||    
T  22435484 gtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaa 22435430  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 635824 - 635770
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| || |||| ||||||||||||||||| ||| |||||||| |||||    
T  635824 gtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaa 635770  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 14898325 - 14898271
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| || |||| ||||||||||||||||| ||| |||||||| |||||    
T  14898325 gtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaa 14898271  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 15716166 - 15716112
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| ||||||| ||||||||||||||||| ||| |||||||| |||||    
T  15716166 gtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaa 15716112  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 33493553 - 33493607
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| ||||||| ||||||||||||||||| ||| |||||||| |||||    
T  33493553 gtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaa 33493607  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 346288 - 346342
Alignment:
Q  56 gtagtgctaaaattttcatatgatcggatgatattgatgtatctctaaggtacaa 110  Q
    |||||||||| ||||||| ||||||||||||||| | ||| |||||||| |||||    
T  346288 gtagtgctaacattttcaaatgatcggatgatatcgttgtttctctaagatacaa 346342  T

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