View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_60 (Length: 249)
Name: NF12611_low_60
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1447264 - 1447026
Alignment:
| Q |
1 |
atacagcaattcaacaccttttctcctgaactgcatgagaaaagtagtcgacaacaaacattcagaactataacccaaacgcagtaagagttctgtaagg |
100 |
Q |
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| T |
1447264 |
atacagcaattcaacaccttttctcctgaactgcatgagaaaagtagtcgacaacaaacattcagaactataacccaaacgcagtaagagttctgtaagg |
1447165 |
T |
|
| Q |
101 |
tgagttttgacccaaacagataagacgtcagagctacttctacacattgtgccacctactactatactatggatatgtttgaagcaaacccaacccactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1447164 |
tgagttttgacccaaacagataagacgtcagagctacttctacacattgtgccacctattactatactatggatatctttgaagcaaacccaacccactc |
1447065 |
T |
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| Q |
201 |
tagcgatacaccttacatttgttacatttgatgtccatc |
239 |
Q |
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||||||||||||| ||||||||||||||| ||||||||| |
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| T |
1447064 |
tagcgatacacctaacatttgttacattttatgtccatc |
1447026 |
T |
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