View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_63 (Length: 245)
Name: NF12611_low_63
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_63 |
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| [»] scaffold0040 (1 HSPs) |
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| [»] scaffold0203 (1 HSPs) |
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Alignment Details
Target: scaffold0040 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 337 - 180
Alignment:
| Q |
79 |
agtattggagaatctatttgaactttcagattagtcattcatttgagatccagattctttgaatgaacacttgaagaaatgataccagaagcatccatga |
178 |
Q |
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| T |
337 |
agtattggggaatctatttgaactttcagcttagtcaaccatttgagatccagattctttgaatgaacacttgaagaaatgataccagaagcatccatga |
238 |
T |
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| Q |
179 |
acatatgagtgtctgatatgtaaagcttgctcttctcttgagtcctcttgatgtccat |
236 |
Q |
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| T |
237 |
acatatgagtgtctgatatgtaaagcttgctcttctcttaagtcctcttgatttccat |
180 |
T |
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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 235
Target Start/End: Complemental strand, 13002473 - 13002341
Alignment:
| Q |
103 |
ttcagattagtcattcatttgagatccagattctttgaatgaacacttgaagaaatgataccagaagcatccatgaacatatgagtgtctgatatgtaaa |
202 |
Q |
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| T |
13002473 |
ttcagcttagtcaaccagttgagatccaggttctcagaatgaacacttgaagagatgataccaaaagcatcgaagaacatgggagtgtctgatatgtaaa |
13002374 |
T |
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| Q |
203 |
gcttgctcttctcttgagtcctcttgatgtcca |
235 |
Q |
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| T |
13002373 |
gcttgctcttctcttgagtgctcttgatttcca |
13002341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0203 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0203
Description:
Target: scaffold0203; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 22995 - 22916
Alignment:
| Q |
82 |
attggagaatctatttgaactttcagattagtcattcatttgagatccagattctttgaatgaacacttgaagaaatgat |
161 |
Q |
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| T |
22995 |
attggagaatctgtttggacttttagcttagtcaaccagttaatattcagattctctgaatgaacactggaagaaatgat |
22916 |
T |
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