View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_66 (Length: 240)
Name: NF12611_low_66
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_66 |
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| [»] chr2 (7 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 2321594 - 2321372
Alignment:
| Q |
18 |
atagtgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2321594 |
atagtgaattcatctttttccgacaaatcaacatggccaccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatgga |
2321495 |
T |
|
| Q |
118 |
gcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttcaa |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2321494 |
gcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctataatatcaaaagtctcatccttcaa |
2321395 |
T |
|
| Q |
218 |
aaacctttctggcttaaactcca |
240 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
2321394 |
aaacctttctggcttaaactcca |
2321372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 2294276 - 2294057
Alignment:
| Q |
21 |
gtgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagca |
120 |
Q |
| |
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|||||||| | | |||||| |||||||||||| |||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2294276 |
gtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaagttagccacaaaatattccaaatggagca |
2294177 |
T |
|
| Q |
121 |
aagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttcaaaaa |
220 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
2294176 |
aagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaa |
2294077 |
T |
|
| Q |
221 |
cctttctggcttaaactcca |
240 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2294076 |
cctttctggcttaaactcca |
2294057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 2310610 - 2310388
Alignment:
| Q |
18 |
atagtgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatgga |
117 |
Q |
| |
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||||||||||| | | |||||| |||||||||||| |||||||| |||| || ||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2310610 |
atagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatgga |
2310511 |
T |
|
| Q |
118 |
gcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttcaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |
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| T |
2310510 |
gcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctggaatgacaaaagtctcatccttcaa |
2310411 |
T |
|
| Q |
218 |
aaacctttctggcttaaactcca |
240 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
2310410 |
aaacctttctggcttaaactcca |
2310388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 2327444 - 2327225
Alignment:
| Q |
21 |
gtgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagca |
120 |
Q |
| |
|
||||||||| |||||| |||||||| |||||||| |||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
2327444 |
gtgaattcaaatttttctgacaaatcgacatggccaccctccggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagta |
2327345 |
T |
|
| Q |
121 |
aagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttcaaaaa |
220 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2327344 |
aagctaaattatatcccggacaaattctcctaccagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaa |
2327245 |
T |
|
| Q |
221 |
cctttctggcttaaactcca |
240 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
2327244 |
cctttctggcttaaactcca |
2327225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 2303888 - 2303670
Alignment:
| Q |
22 |
tgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaa |
121 |
Q |
| |
|
||||||| | |||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
2303888 |
tgaattcttgtttttccgacaaatcaacatagccgccctctggaagcttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaa |
2303789 |
T |
|
| Q |
122 |
agctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttcaaaaac |
221 |
Q |
| |
|
||||||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||| |
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|
| T |
2303788 |
agctaaattaagtgcaggacaaattctcctttcagcttcaaacggcatcatctttatctccttactccctgtaatgtcaaaattctcatccttccaaaac |
2303689 |
T |
|
| Q |
222 |
ctttctggcttaaactcca |
240 |
Q |
| |
|
||||||||||||||||||| |
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| T |
2303688 |
ctttctggcttaaactcca |
2303670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 2331162 - 2330940
Alignment:
| Q |
18 |
atagtgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatgga |
117 |
Q |
| |
|
||||||||||| | ||| || ||||||||||| | || ||||| |||| || ||||| ||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
2331162 |
atagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatgaa |
2331063 |
T |
|
| Q |
118 |
gcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttcaa |
217 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
2331062 |
gcaaagctaaattatatccaggacaaattctcctcccagctccaaatggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaa |
2330963 |
T |
|
| Q |
218 |
aaacctttctggcttaaactcca |
240 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
2330962 |
aaacctttctggcttaaattcca |
2330940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 2351466 - 2351246
Alignment:
| Q |
20 |
agtgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagc |
119 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| || || || |||| || ||||| ||||||||||||||| |||||||||||||||||||| || ||| |
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|
| T |
2351466 |
agtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagc |
2351367 |
T |
|
| Q |
120 |
aaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttcaaaa |
219 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| ||| | ||||| |||||||||||||||||||||||||| ||||| ||||| || ||||||||||||| |
|
|
| T |
2351366 |
aaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaa |
2351267 |
T |
|
| Q |
220 |
acctttctggcttaaactcca |
240 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
2351266 |
acctctctggcttaaactcca |
2351246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 41127474 - 41127252
Alignment:
| Q |
21 |
gtgaattcatctttttccgacaaatcaacatggccg---ccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatgga |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||| || ||||| ||| || |||||| |||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
41127474 |
gtgaattcagttttttccgacaaatcaacataaccagctccctctagaatcttccaattaaaattccagaccaaattagccacaaagtattccaaatgga |
41127375 |
T |
|
| Q |
118 |
gcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctgtaatatcaaaagtctcatccttcaa |
217 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
41127374 |
gcaaagctaaattatatccaggacaaattctcctcccaactccaaacggcatcatctttatctctttagtcccggtaatatcaaaagcctcatccttcaa |
41127275 |
T |
|
| Q |
218 |
aaacctttctggcttaaactcca |
240 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
41127274 |
aaacctttctggtttaaactcca |
41127252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 184
Target Start/End: Complemental strand, 26494992 - 26494893
Alignment:
| Q |
85 |
aaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctcttt |
184 |
Q |
| |
|
||||||| ||||| ||||| ||||| |||||||||| || || ||| | |||||||| ||||| || ||||||||||||||||||||||||||||| |
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|
| T |
26494992 |
aaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggcatcatctttatctcttt |
26494893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 26506966 - 26506923
Alignment:
| Q |
138 |
ggacaaattctccttccagctccaaacggcatcatctttatctc |
181 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
26506966 |
ggacaaatcctccttcctgctccaaatggcatcatctttatctc |
26506923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 55017133 - 55017070
Alignment:
| Q |
138 |
ggacaaattctccttccagctccaaacggcatcatctttatctctttactccctgtaatatcaa |
201 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
55017133 |
ggacaaatcctcctcccagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa |
55017070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 15176356 - 15176408
Alignment:
| Q |
138 |
ggacaaattctccttccagctccaaacggcatcatctttatctctttactccc |
190 |
Q |
| |
|
||||| |||||||| || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
15176356 |
ggacacattctcctccctgctccaaatggcatcatctttatctctttactccc |
15176408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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