View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_68 (Length: 232)
Name: NF12611_low_68
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 9031770 - 9031971
Alignment:
| Q |
20 |
agatcggggtgcaatcatcacttgaacaaattaagctagtgtaattaatgatataattacacactctcttcatataccccacaggatcagtggaaataaa |
119 |
Q |
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| T |
9031770 |
agatcggggtgcaatcatcacttgaacaaattaagctagtgtaattaatgatataattacacactctcttcatataccccacaggatcagtgaaaataaa |
9031869 |
T |
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| Q |
120 |
tagcattttacttgattaatttacaaaaataatgtatgaataagtttgttctgacttgcatgttatgttggtcatccatatatcttgtacattgatgtcc |
219 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9031870 |
tagcattttacttgattaatttacaaaaaaaatgtatgaataagtttgttctgacttgcatgttatgttggtcatccatatatcttgtacattgatatcc |
9031969 |
T |
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| Q |
220 |
at |
221 |
Q |
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|| |
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| T |
9031970 |
at |
9031971 |
T |
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