View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12611_low_69 (Length: 229)

Name: NF12611_low_69
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12611_low_69
NF12611_low_69
[»] chr5 (3 HSPs)
chr5 (74-224)||(2027977-2028128)
chr5 (93-162)||(31196087-31196157)
chr5 (81-122)||(36529161-36529202)
[»] chr3 (1 HSPs)
chr3 (74-123)||(21652835-21652884)
[»] chr4 (1 HSPs)
chr4 (81-151)||(16959037-16959108)
[»] scaffold0024 (1 HSPs)
scaffold0024 (93-162)||(42714-42784)
[»] chr7 (2 HSPs)
chr7 (121-162)||(3336874-3336916)
chr7 (93-162)||(3340637-3340706)
[»] chr2 (3 HSPs)
chr2 (124-162)||(18503924-18503962)
chr2 (74-135)||(3242653-3242714)
chr2 (110-162)||(13197951-13198003)
[»] chr1 (2 HSPs)
chr1 (83-151)||(10895028-10895097)
chr1 (87-162)||(49927875-49927951)
[»] chr6 (1 HSPs)
chr6 (80-151)||(32243320-32243392)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 74 - 224
Target Start/End: Complemental strand, 2028128 - 2027977
Alignment:
Q  74 catattattaatgaaagaaaattttgtaaaatcatacataatttctctttcacatataaaataattacattttttaatatgtttgaaatcggc-aggtga 172  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  2028128 catattattaatgaaagacaattttgtaaaatcacacataatttctctttcacatataaaataattacattttttaatatgtttaaaaccggcaaggtga 2028029  T
Q  173 catataataaaatatgaatgaagtaatacatatgtattgtgtctgtgctcct 224  Q
    |||||||||||||||||||||||||||| | ||||||||||| || ||||||    
T  2028028 catataataaaatatgaatgaagtaatataaatgtattgtgtgtgcgctcct 2027977  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 31196157 - 31196087
Alignment:
Q  93 aattttgtaaaatcatacataatttctctttcacatataaaat-aattacattttttaatatgtttgaaat 162  Q
    ||||||||||||| || |||||| ||| |||| || ||||||| ||||||||||||||||| || ||||||    
T  31196157 aattttgtaaaataattcataatatctatttcccacataaaattaattacattttttaatacgtgtgaaat 31196087  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 36529202 - 36529161
Alignment:
Q  81 ttaatgaaagaaaattttgtaaaatcatacataatttctctt 122  Q
    |||||||| || |||||||||||||||| |||||||||||||    
T  36529202 ttaatgaaggataattttgtaaaatcattcataatttctctt 36529161  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 21652884 - 21652835
Alignment:
Q  74 catattattaatgaaagaaaattttgtaaaatcatacataatttctcttt 123  Q
    |||||||||||| || || |||||||||||||||| ||||||||||||||    
T  21652884 catattattaataaaggataattttgtaaaatcattcataatttctcttt 21652835  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 16959108 - 16959037
Alignment:
Q  81 ttaatgaaagaaaattttgtaaaatcatacataatttctctttcacatataaaa-taattacattttttaat 151  Q
    |||||||| || ||||||||||||| || || ||||||||| || |||| |||| |||||||||||||||||    
T  16959108 ttaatgaatgataattttgtaaaataattcacaatttctctatctcatacaaaattaattacattttttaat 16959037  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 42714 - 42784
Alignment:
Q  93 aattttgtaaaatcatacataatttctctttcacatataaaat-aattacattttttaatatgtttgaaat 162  Q
    ||||||||||||  |  |||||| ||||||| ||||||||||| |||||||||| |||||| |||||||||    
T  42714 aattttgtaaaacaactcataatatctcttttacatataaaattaattacatttcttaatacgtttgaaat 42784  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 3336916 - 3336874
Alignment:
Q  121 tttcacatataaaat-aattacattttttaatatgtttgaaat 162  Q
    ||||||||||||||| |||||||||| ||||||||||||||||    
T  3336916 tttcacatataaaattaattacatttcttaatatgtttgaaat 3336874  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 3340706 - 3340637
Alignment:
Q  93 aattttgtaaaatcatacataatttctctttcacatataaaataattacattttttaatatgtttgaaat 162  Q
    ||||||||||||  ||||||||| |||||||| |||| ||| |||||| |||| | ||||| ||||||||    
T  3340706 aattttgtaaaacaatacataatatctctttcccatacaaattaattatatttctaaatatatttgaaat 3340637  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 18503924 - 18503962
Alignment:
Q  124 cacatataaaataattacattttttaatatgtttgaaat 162  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  18503924 cacatataaaataattacattttttaatatatgtgaaat 18503962  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 3242653 - 3242714
Alignment:
Q  74 catattattaatgaaagaaaattttgtaaaatcatacataatttctctttcacatataaaat 135  Q
    ||||| |||||| | ||| |||||||||||||||| | |||||||||||||  |||||||||    
T  3242653 catatcattaataagagataattttgtaaaatcattcgtaatttctctttctaatataaaat 3242714  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 13198003 - 13197951
Alignment:
Q  110 cataatttctctttcacatataaaataattacattttttaatatgtttgaaat 162  Q
    |||||||| |||||| |||| ||| ||||||||||||||||||| ||| ||||    
T  13198003 cataatttttctttctcatacaaattaattacattttttaatatatttaaaat 13197951  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 10895097 - 10895028
Alignment:
Q  83 aatgaaagaaaattttgtaaaatcatacataatttctctttcacatataaaa-taattacattttttaat 151  Q
    |||||| || ||||||||||||| || ||||||||||||||| | | ||||| ||||||||||| |||||    
T  10895097 aatgaaggataattttgtaaaataattcataatttctctttctcgtgtaaaattaattacatttattaat 10895028  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 49927951 - 49927875
Alignment:
Q  87 aaagaaaattttgtaaaatcatacataatttctctttcacatataaaa-taattacattttttaatatgtttgaaat 162  Q
    ||||| ||||||||||||  ||  ||||| ||||||||||| |||||| ||||||||||| ||||||  ||||||||    
T  49927951 aaagataattttgtaaaacaattgataatatctctttcacacataaaattaattacatttcttaatacatttgaaat 49927875  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 32243320 - 32243392
Alignment:
Q  80 attaatgaaagaaaattttgtaaaatcatacataatttctctttcacatataa-aataattacattttttaat 151  Q
    ||||||||| || ||||||||||||| ||  |||||||||||||  |||| || | |||||||||||||||||    
T  32243320 attaatgaaggataattttgtaaaattatttataatttctctttttcatacaacattaattacattttttaat 32243392  T

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