View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12611_low_70 (Length: 228)
Name: NF12611_low_70
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_70 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 16193842 - 16194031
Alignment:
| Q |
20 |
acatagaagcattgattccttctactcttaattgagctatctttattttccatgtatggatgccaaatgtatttagttagacaatagaatctagcacatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16193842 |
acatagaagcattgattccttctactcttaattgagctatctttattttccatgtatggatgccaaatgtatttagttagacaatagaatctagcacatg |
16193941 |
T |
|
| Q |
120 |
gaaagtggagctaaacccatctcctcttttttccatgtttaatatcgtttgttcccatccatcattgtttcctcctttctaagaggcatg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16193942 |
gaaagtggagctaaacccatctcctcttttttccatgtttaatatcgtttgttcccatccatcattgtttcctcctttctaagagacatg |
16194031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University