View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12611_low_74 (Length: 208)
Name: NF12611_low_74
Description: NF12611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12611_low_74 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 2028371 - 2028178
Alignment:
| Q |
1 |
agggacttagttgaatcatcaccctaaaatccacctaaaaacaaacgtttgacatattatattttacttcatccttattttattatatgtcacattttaa |
100 |
Q |
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| T |
2028371 |
agggacttagttgaaccctcaccctaaaatccacctaaaaacaaacgtttgacatattatacttcatttcatccttattttattatatgtcacattttaa |
2028272 |
T |
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| Q |
101 |
-aaaatatgaaatattataaaccactttacaataacaatgaaacattcatgtttcttttctatcacacccttatttattattactctatttctt |
193 |
Q |
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| T |
2028271 |
aaaaatatgaaatattataaaccactttacaataacaatgaaacattgatgtttcttttctatcacacccttatttaattttactctatttctt |
2028178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 24000345 - 24000308
Alignment:
| Q |
122 |
cactttacaataacaatgaaacattcatgtttcttttc |
159 |
Q |
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|||||||||||| |||||||||||| |||||||||||| |
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| T |
24000345 |
cactttacaataccaatgaaacattaatgtttcttttc |
24000308 |
T |
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