View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12612_high_10 (Length: 271)
Name: NF12612_high_10
Description: NF12612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12612_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 43111369 - 43111605
Alignment:
| Q |
16 |
atgaaagtccaatagcccatatattcaaacatgtccatgataaggtatttaaaagcccttacaaatatgtctatcagaaaatcttcttctgatttccgaa |
115 |
Q |
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| T |
43111369 |
atgaaagtctaatagcccatatatacaaacatgtccatgataaggtatttaaaagcccttacaaatatgtctatcagaaaatcttcttctgatttcagaa |
43111468 |
T |
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| Q |
116 |
ccagtaagttcacacttccctgcaagaatgtccataataagattcgctaactgagatataagttgtaaaggatctatccttgatctcaacagctcccggg |
215 |
Q |
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| T |
43111469 |
ccagtaagttcacacttccctgcaagaatgtccataataagattcgctagctgagatataagttgtaaaggatctatccttgatctcaacagctcccggg |
43111568 |
T |
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| Q |
216 |
ctcttataaccgtatttgaagtgtcggatgacaaaga |
252 |
Q |
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| T |
43111569 |
ctcttataaccgtatttgaagtgtcggatgacaaaga |
43111605 |
T |
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Back To:
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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 251
Target Start/End: Original strand, 34259345 - 34259465
Alignment:
| Q |
131 |
ttccctgcaagaatgtccataataagattcgctaactgagatataagttgtaaaggatctatccttgatctcaacagctcccgggctcttataaccgtat |
230 |
Q |
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||||| ||||| |||||||| || |||||| | ||||| || | |||||| |||||||| ||||||||||||| |||||| || ||||||||||| |||| |
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| T |
34259345 |
ttcccagcaaggatgtccattatgagattcaccaactgtgacacaagttgcaaaggatcgatccttgatctcatcagctcgcgagctcttataacagtat |
34259444 |
T |
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| Q |
231 |
ttgaagtgtcggatgacaaag |
251 |
Q |
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| T |
34259445 |
ttgatgtgtcaggtgacaaag |
34259465 |
T |
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