View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12612_high_13 (Length: 250)
Name: NF12612_high_13
Description: NF12612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12612_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3575569 - 3575821
Alignment:
| Q |
1 |
ccatcctcttcattttcaatagagctatttatttgcttttaacttagttgcaa--------------tggctacatcaacaatggctctttcttcttcaa |
86 |
Q |
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| T |
3575569 |
ccatcctcttcattttcaatagagctatttatttgcatttaactaagttgcaaataaaatactagaatggctacatcaacaatggctctctcttcttcaa |
3575668 |
T |
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| Q |
87 |
caatggttgggaaggcaatcaagctttcccccctctactccagtccttggcatgggaagaatcaccatgaggaaaacaaccaccaagaagaacgttcctt |
186 |
Q |
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| T |
3575669 |
caatggttgggaaggcaatcaagctttcccct-tccactccagaccttgtgatgggaagaatcaccatgaggaaaacaaccaacaagaagaacgtccctt |
3575767 |
T |
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| Q |
187 |
ctggaagcccgtggtacggaccagaccgtgtcaagtacttgggtccattctctg |
240 |
Q |
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| T |
3575768 |
ctggaagcccgtggtacggtccagatcgtgtcaaatacttgggtccattctctg |
3575821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 3572351 - 3572537
Alignment:
| Q |
53 |
atggctacatcaacaatggctctttcttcttcaacaatggttgggaaggcaatcaagctttcccccctctactccagtccttggcatgggaagaatcacc |
152 |
Q |
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| T |
3572351 |
atggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttcccc-ctctactccagaccttgtcatgggaagaattacc |
3572449 |
T |
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| Q |
153 |
atgaggaaaacaaccaccaagaagaacgttccttctggaagcccgtggtacggaccagaccgtgtcaagtacttgggtccattctctg |
240 |
Q |
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| T |
3572450 |
atgaggaaaacaaccaccaagaagaatgttccttctggaagcccatggtacggtccagaccgtgtcaagtacttgggtccattctctg |
3572537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 51 - 240
Target Start/End: Complemental strand, 3585585 - 3585397
Alignment:
| Q |
51 |
caatggctacatcaacaatggctctttcttcttcaacaatggttgggaaggcaatcaagctttcccccctctactccagtccttggcatgggaagaatca |
150 |
Q |
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| T |
3585585 |
caatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggcaatcaagctttcccct-tcgactccagaccttgtgatgggaagaatca |
3585487 |
T |
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| Q |
151 |
ccatgaggaaaacaaccaccaagaagaacgttccttctggaagcccgtggtacggaccagaccgtgtcaagtacttgggtccattctctg |
240 |
Q |
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| T |
3585486 |
ccatgaggaaaacaaccaccaagaagactgctccttctggaagccagtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
3585397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 3569302 - 3569488
Alignment:
| Q |
51 |
caatggctacatcaacaatggctctttcttcttcaacaatggttgggaaggcaatcaagctttcccccctctactccagtccttggcatgggaagaatca |
150 |
Q |
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| T |
3569302 |
caatggctgcttcaacaatgtccctctcttcttcatcatttgtcgggaaggcaatcaaactttcccca-tccactcaagacattggggtgggaagagtca |
3569400 |
T |
|
| Q |
151 |
ccatgaggaaaacaaccaccaagaagaacgttccttctggaagcccgtggtacggaccagaccgtgtcaagtacttgggtccattctc |
238 |
Q |
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| T |
3569401 |
caatgaggaaaacaaccaccaagaagtccgttccgtctggaagcccatggtacggtccagaccgtgtgaagtacttgggcccattctc |
3569488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 3563665 - 3563840
Alignment:
| Q |
62 |
tcaacaatggctctttcttcttcaacaatggttgggaaggcaatcaagctttcccccctctactccagtccttggcatgggaagaatcaccatgaggaaa |
161 |
Q |
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||||||||| |||| ||||||||| || | || ||||||||||||||||||||||| || || | || | |||| |||||||| |||| ||||||||| |
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| T |
3563665 |
tcaacaatgtctctctcttcttcatcatttgtagggaaggcaatcaagctttcccca-tccacccaagacattggggtgggaagagtcacaatgaggaaa |
3563763 |
T |
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| Q |
162 |
acaaccaccaagaagaacgttccttctggaagcccgtggtacggaccagaccgtgtcaagtacttgggtccattctc |
238 |
Q |
| |
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| T |
3563764 |
gcaaccaccaagaagtctgttccttctggaagtccttggtacggtccagaccgtgtcaagtacttgggcccattctc |
3563840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 13275586 - 13275767
Alignment:
| Q |
51 |
caatggctacatcaacaatggctctttcttcttcaacaatggttgggaaggcaatcaagctttcccccctctactccagtccttggcatgggaagaatca |
150 |
Q |
| |
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|||||||| | ||||||||| |||| ||||||||| || ||||||| ||||||||||| | || ||||||||| | || |||||| || ||||| ||| |
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| T |
13275586 |
caatggctgcctcaacaatgtctctctcttcttcatcattggttggaaaggcaatcaaac-ttaacccctctacccaagaccttggtattggaagggtca |
13275684 |
T |
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| Q |
151 |
ccatgaggaaaacaaccaccaagaagaacgttccttctggaagcccgtggtacggaccagaccgtgtcaagtacttgggtccattct |
237 |
Q |
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|||||| ||||||||||| ||||| ||| |||| ||||| || ||||| || |||||||||||||||||| |||| ||||||| |
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| T |
13275685 |
ccatga-aaaaacaaccac---aaagaaagtttcttcaggaagtccatggtatggtccagaccgtgtcaagtacctgggcccattct |
13275767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 38356806 - 38356857
Alignment:
| Q |
189 |
ggaagcccgtggtacggaccagaccgtgtcaagtacttgggtccattctctg |
240 |
Q |
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|||||||| |||||||| ||||||||||| |||||||| || |||||||||| |
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| T |
38356806 |
ggaagcccatggtacggcccagaccgtgttaagtacttaggcccattctctg |
38356857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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