View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12612_high_18 (Length: 203)
Name: NF12612_high_18
Description: NF12612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12612_high_18 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 26126575 - 26126373
Alignment:
| Q |
1 |
ctggttatgacgggcttcatgctgctaaaagaacaatggatatgtatctttttatgaatagtaaagttcttttcaagacagtgaggaacgatggtaaact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26126575 |
ctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaatagtaaagttcttttcaagacagtgaggaacgatgctaaact |
26126476 |
T |
|
| Q |
101 |
cagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaatactatgttaatgggaaccaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26126475 |
cagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagat |
26126376 |
T |
|
| Q |
201 |
gct |
203 |
Q |
| |
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||| |
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| T |
26126375 |
gct |
26126373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 26064631 - 26064429
Alignment:
| Q |
1 |
ctggttatgacgggcttcatgctgctaaaagaacaatggatatgtatctttttatgaatagtaaagttcttttcaagacagtgaggaacgatggtaaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26064631 |
ctggttatgacgggcttcatgctgctaaaaggactatggatatgtacctttttatgaatagtaaagttcttttcaagacagtgaggaacgatgctaaact |
26064532 |
T |
|
| Q |
101 |
cagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaatactatgttaatgggaaccaagat |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
26064531 |
cagtaaattgaaaccggtaattattcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagat |
26064432 |
T |
|
| Q |
201 |
gct |
203 |
Q |
| |
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||| |
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| T |
26064431 |
gct |
26064429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 26084356 - 26084154
Alignment:
| Q |
1 |
ctggttatgacgggcttcatgctgctaaaagaacaatggatatgtatctttttatgaatagtaaagttcttttcaagacagtgaggaacgatggtaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || | ||||||||||| ||||||||||||||||| ||| || |
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| T |
26084356 |
ctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacct |
26084257 |
T |
|
| Q |
101 |
cagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaatactatgttaatgggaaccaagat |
200 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26084256 |
cagtaaattgaaaccggttattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagat |
26084157 |
T |
|
| Q |
201 |
gct |
203 |
Q |
| |
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||| |
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| T |
26084156 |
gct |
26084154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 26119918 - 26119716
Alignment:
| Q |
1 |
ctggttatgacgggcttcatgctgctaaaagaacaatggatatgtatctttttatgaatagtaaagttcttttcaagacagtgaggaacgatggtaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||| ||| ||| || |
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| T |
26119918 |
ctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaagacagtgaggaacaatgctaacct |
26119819 |
T |
|
| Q |
101 |
cagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaatactatgttaatgggaaccaagat |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
26119818 |
cagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttacgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagat |
26119719 |
T |
|
| Q |
201 |
gct |
203 |
Q |
| |
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||| |
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|
| T |
26119718 |
gct |
26119716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 26096631 - 26096429
Alignment:
| Q |
1 |
ctggttatgacgggcttcatgctgctaaaagaacaatggatatgtatctttttatgaatagtaaagttcttttcaagacagtgaggaacgatggtaaact |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| || | ||||||||||| ||||||||||||||||| ||| || |
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| T |
26096631 |
ctggttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacct |
26096532 |
T |
|
| Q |
101 |
cagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaatactatgttaatgggaaccaagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
26096531 |
cagtaaattgaaaccggtaattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaatgggaaccaagat |
26096432 |
T |
|
| Q |
201 |
gct |
203 |
Q |
| |
|
||| |
|
|
| T |
26096431 |
gct |
26096429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 26035983 - 26035781
Alignment:
| Q |
1 |
ctggttatgacgggcttcatgctgctaaaagaacaatggatatgtatctttttatgaatagtaaagttcttttcaagacagtgaggaacgatggtaaact |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| ||| || |
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|
| T |
26035983 |
ctggttatgaagggcttcatgctgctagaagaactatggatatgtatctctttatgaacagcaaagttcttttcaagacagtgaggaacgatgctaacct |
26035884 |
T |
|
| Q |
101 |
cagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaatactatgttaatgggaaccaagat |
200 |
Q |
| |
|
||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||| |
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| T |
26035883 |
cagtaaattgaaaccagtaattgttcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgtcgaatattatgtcaatgggaaacaagat |
26035784 |
T |
|
| Q |
201 |
gct |
203 |
Q |
| |
|
||| |
|
|
| T |
26035783 |
gct |
26035781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 26075686 - 26075560
Alignment:
| Q |
77 |
gacagtgaggaacgatggtaaactcagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcggttgttgaa |
176 |
Q |
| |
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||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| |
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| T |
26075686 |
gacagtgaggaacgatgctaacctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcagttgttgaa |
26075587 |
T |
|
| Q |
177 |
tactatgttaatgggaaccaagatgct |
203 |
Q |
| |
|
|| ||||||||||||||| |||||||| |
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| T |
26075586 |
tattatgttaatgggaactaagatgct |
26075560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 6773304 - 6773203
Alignment:
| Q |
1 |
ctggttatgacgggcttcatgctgctaaaagaacaatggatatgtatctttttatgaatagtaaagttcttttcaagacagtgaggaacgatggtaaact |
100 |
Q |
| |
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|||||||||| || ||||||||||| || ||||||||||||||||| ||||||||||| ||||| ||||| || ||||| ||||| || |||| ||| || |
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| T |
6773304 |
ctggttatgatggacttcatgctgcaaagagaacaatggatatgtacctttttatgaacagtaaggttctgtttaagactgtgagaaaagatgctaagct |
6773205 |
T |
|
| Q |
101 |
ca |
102 |
Q |
| |
|
|| |
|
|
| T |
6773204 |
ca |
6773203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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